Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0242 ATGAAGAGCGATACCCATTTCAACATTCATCTTTTCTTACATTTTTTCCTCTTCTTTGGCACTTTTCTTTTGTGCCTTTCTTCTTCTTCTTCTTCTGTTTCTGAAGAGTTTCTTCAAGTTTCCAGCCATGGCGGCCGAGGCCTTACTGACGCTGAAGCTCATTACATCCGTCAACGTCAACTCCTTTACTACAGAGATGAATTTGGCGACCGTGGTGAAGAAGTCGTCGTCGATCCTAAGCTTGTTTTTGAAAATGACAGAATCAGAAATGCTTACATAGCATTACAAGCTTGGAAGCAAGCGATTCTGTCTGACCCTTCAAATCTCACTCGGAATTGGGTTGGATCTGATGTTTGTCATTACACAGGGGTTTTCTGTGCTCCGGCGCCGGATAATTCATCGATCCGTACAGTTGCCGGAATTGACCTCAACCACGGCGACATTGCCGGGTACTTGCCGGAGGAGCTTGGTCTTCTTGTGGATCTTGCATTGTTCCATATAAACTCTAATCGGTTCTGTGGGACTGTTCCTCACAAGTTCAAGAACCTGAAGAGGCTGTTCGAGTTGGATCTGAGTAACAATCGCTTCGCCGGAAAATTCCCTCGGGTGGTTCTTGAGTTGCCGGAGCTGAAGTTTTTGGATCTGAGGTTCAACGAGTTTGAAGGGACTGTACCTAAGGAGCTTTTCGATAAGGATTTGGACGCCATTTTCATCAACCATAACAGATTCCGGTTCGAGTTACCGGAAAATTTCGGGAACTCGCCGGTTTCGGTTATTGTTCTTGCTAATAACAAATTTCATGGGTGTGTGCCGGGAAGCATTGGGAATATGTCCAGATTGAATGAGATTATTCTGATGAATAATGGGTTTCGATCGTGTTTGCCGTCGGAGATTGGGTTTCTGAAGAATCTGACGGTGTTTGATGTGAGTTTTAATGAATTTTTTGGGAGTTTGCCGGAGACGATAGGTGGAATGGTGAGTTTGGAGCAGCTGAATGTGGCGCATAATTTCTTGTCTGGAAAGATTCCGGAGAGTATCTGTAAATTGCCGAATCTGCAGAACTTTACTTACTCTTATAATTTCTTTACGGGAGAGGCGCCGTCGTGCTTGGCGTTGCCGGATTTTGATGACCGGAGGAACTGTATACCGAAGCGGCCGGTGCAACGTTCTGAGAGGCAATGTAAGTCGTTCTTGTCTAAGCCTGTGGATTGCAGTTCTTTTGGATGTCCTTCTTATGTTGCTCCGTCGCCACCTGTGGTGGTGCCTTCTCCGCCACCTGTTGTTGTCCCATCGCCATCGCCACCTGTTTTCTCTCCTCCGCCACCTGAATCCGCTTCACATCCCATTTACCGGCCACTCCCTCCGCCACCGCCATCCCCATCTCCTCCTCCCCCACCTGTTTACTCTCCTCCTCCGCCTCCACCATCCCCGCCACCCCCGTCTCCACCACCCCCACCACCGCCAGTTTACTCTCCACCCCCACCTCCCCCGTCTCCTCCTCCGCCTTCTCCACCACCACCTTCCCCACCCCCACCATCACCCCCACCGCCGCCCCCACCGGTTTACTCTCCACCTCCACCTCCACCATCACCACCCCCACCATCTCCACCGCCACCACCACCACCGGTTTACTCTCCGCCACCACCTCCACCATCTCCTCCTCCGCCGTCTCCTCCCCCACCATCGCCACCACCGGCGCCGGTGTATTGCGTCCGACCATCACCCCCACCTCCACCACCGAACTCTCCCCCACCTCCTCCTCCCTTGTTCTCTCCACCCCCACCTGTTTACTACTACAATTCACCGCCCCCGCCCAACTCTCCACCACCTCCGCCATTGTACTCTCCTCCACCACCGCCCAACTCGCCGCCTCCTCCGCCACATTCACCTCCACCACCAATCTATCCTTACTTATCTCCCCCACCTCCTCCACCTGTCTATTCTCCCCCTCCACCGGTCTATTCACCGCCCCCACCACCGCCGTGTATAGAGCCTCCCCCACCTCCACCGCCACCGTGTATAGAGTATCATGAACCCCCACCCCCACCATCACCCTCACCACCTCCGCCCATCCAATACCATCCTCCGCCGTCTCCTTCACCCCCACCCCCACCTGCACCGACCCCAGTTTACCATTCACCTCCTCCGCCGGTTTATCACTCTCCACCACCACCACCATCACCGTCGCCTCCTCCGCCACCTGCATCCCCACCACCATCACCTGTATACGAAGGCCCATTGCCACCAATCTATGGAGTTTCGTACGCCTCTCCTCCACCTCCACCCTTCTATTGA 2295 53.46 MKSDTHFNIHLFLHFFLFFGTFLLCLSSSSSSVSEEFLQVSSHGGRGLTDAEAHYIRQRQLLYYRDEFGDRGEEVVVDPKLVFENDRIRNAYIALQAWKQAILSDPSNLTRNWVGSDVCHYTGVFCAPAPDNSSIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPHKFKNLKRLFELDLSNNRFAGKFPRVVLELPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFRFELPENFGNSPVSVIVLANNKFHGCVPGSIGNMSRLNEIILMNNGFRSCLPSEIGFLKNLTVFDVSFNEFFGSLPETIGGMVSLEQLNVAHNFLSGKIPESICKLPNLQNFTYSYNFFTGEAPSCLALPDFDDRRNCIPKRPVQRSERQCKSFLSKPVDCSSFGCPSYVAPSPPVVVPSPPPVVVPSPSPPVFSPPPPESASHPIYRPLPPPPPSPSPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPSPPPAPVYCVRPSPPPPPPNSPPPPPPLFSPPPPVYYYNSPPPPNSPPPPPLYSPPPPPNSPPPPPHSPPPPIYPYLSPPPPPPVYSPPPPVYSPPPPPPCIEPPPPPPPPCIEYHEPPPPPSPSPPPPIQYHPPPSPSPPPPPAPTPVYHSPPPPVYHSPPPPPSPSPPPPPASPPPSPVYEGPLPPIYGVSYASPPPPPFY 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2917300 2919594 + CmPI595203_11g002420.1 Cmu11g0242 428764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0242 764 PRINTS Proline rich extensin signature 410 426 - -
Cmu11g0242 764 PRINTS Proline rich extensin signature 432 444 - -
Cmu11g0242 764 PRINTS Proline rich extensin signature 444 465 - -
Cmu11g0242 764 PRINTS Proline rich extensin signature 471 487 - -
Cmu11g0242 764 SUPERFAMILY L domain-like 92 372 - -
Cmu11g0242 764 MobiDBLite consensus disorder prediction 429 586 - -
Cmu11g0242 764 FunFam Leucine-rich repeat extensin-like protein 1 92 253 - -
Cmu11g0242 764 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 25 528 IPR051582 -
Cmu11g0242 764 MobiDBLite consensus disorder prediction 604 631 - -
Cmu11g0242 764 MobiDBLite consensus disorder prediction 673 750 - -
Cmu11g0242 764 Pfam Leucine rich repeat N-terminal domain 94 126 IPR013210 -
Cmu11g0242 764 Gene3D Ribonuclease Inhibitor 92 252 IPR032675 -
Cmu11g0242 764 Pfam Leucine rich repeat 164 219 IPR001611 GO:0005515(InterPro)
Cmu11g0242 764 FunFam Leucine-rich repeat extensin-like protein 5 254 393 - -
Cmu11g0242 764 Pfam Leucine Rich Repeat 327 349 IPR001611 GO:0005515(InterPro)
Cmu11g0242 764 Pfam Leucine Rich Repeat 303 325 IPR001611 GO:0005515(InterPro)
Cmu11g0242 764 Gene3D Ribonuclease Inhibitor 253 396 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0291 Cmu-Chr7:2924466 Cmu11g0242 Cmu-Chr11:2917300 5.40E-33 dispersed
Cmu05g0534 Cmu-Chr5:4587282 Cmu11g0242 Cmu-Chr11:2917300 1.60E-39 transposed
Cmu11g0242 Cmu-Chr11:2917300 Cmu06g1076 Cmu-Chr6:20694770 7.00E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0242 - - - 0.0