Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0257 ATGGCTGCTGCAATTTCTCTTTGCTCTGTTTTTCTTCTTCTTCTTCTGACTCGGTGGGTCGACTCGGAGCCGACTCAGGATCGACAAGCCCTTCTCGATTTCTTCTCTAAAACTCCTCACGCCAATCGGGTTCAATGGAATACTTCTAATTCTGTCTGTAATTGGGTTGGCGTTGAGTGCGATTCGAATCAGTCGTTTGTTTACTCTCTTCGTTTGCCTGGTGTTGGCCTTGTCGGACCGATTCCGGCCAATACAATCGGGAAATTGACTCAGCTCCGAGTTCTCAGTCTCCGTTCCAACCGTCTCTCCGGCGAGATCCCATCGGATTTTTCCAATTTAGTAATGCTGCGGAATCTGTATCTTCAGGATAATGCTTTCGCCGGCGAGTTTCCGTCGAGTTTGACTCGTTTGACTCGGCTTACTCGGCTGGATTTGTCGTCGAACGAATTCTCCGGTCCGATTCCGCCGTCTGTTGACAATCTGACTCACTTGAGTGGGATTTTCTTGCAGAACAATGGGTTCTCCGGTTCACTCCCGAGTATCTCAGCCGTTAATTTAACAAACTTCAATGTCTCTAACAACAAACTCAACGGTTCGATTCCGAAATCATTGGCTAAATTCCCCACCTCCTCCTTCGCCGGGAACTTAGATCTCTGCGGCGGACCATTCCCACCCTGCAACCCATTCCCTCCCTCTCCATCTCCGTCACAAAACCCTTCACCAGCCCACAAAAAATCGAAGAAACTCTCCACAGCGGCGATAATCGGAATCATAATTGGCGCCGTTTTCGCAGCTTTTCTTCTCCTCCTCGTCCTCATCCTCTGCATTCGGCGGCGGTCCCGCGGACAACAGACGAAGTCAGCGAAGCCACCATCGGCGGTGGGAACGGCGGCTCGATCAATTCCAGTAGCAGAGGCCGGAACGTCGTCGTCGAAAGACGACATTACCGGAGGATCAGTGGAGGCGACGGAGAGGAACAAGCTGGTGTTCTTCGAAGGAGGGATTTACAACTTCGATTTGGAGGATTTGTTGAGAGCTTCGGCGGAGGTATTGGGGAAAGGAAGCGTGGGAACGTCGTACAAGGCGGTACTAGAAGAAGGGACGACGGTGGTGGTGAAGCGGCTGAAGGATGTGGTGGTGACGAAGAAAGAATTCGAAACTCAAATGGAAATTTTAGGGAAAATTAAACATGAAAATGTGGTTCCTCTCAGAGCATTTTACTTCTCCAAAGATGAAAAACTGCTTGTTTATGATTATATCTCCACCGGAAGTTTGTCGGCCAGCCTTCACGGAAGCAGAGGCTCCGGCAGGACGCCGTTGGACTGGGATTCAAGAATGAGAATAGCTCTAAGCGCCGGCAGGGGATTAGCGCATCTCCACCTCGCCGGCAAGGTGGTTCACGGCAACATTAAATCCTCCAACATCCTTCTCCGCCCGGATCACGACGCCTGCATCTCCGATTTCGGCCTAAACCCACTCTTCGGCACCGCCACGCCGCCGAATCGCGTCGCCGGCTACCGGGCGCCGGAGGTCGTCGAAACCCGAAAAGTCACATTCAAATCCGACGTTTACAGCTACGGCGTTCTCCTCCTTGAGCTCCTGACCGGGAAAGCCCCGAACCAGCAATCCCTCGGCGAGGAGGGAATCGACCTTCCCCGGTGGGTCCAGTCCGTCGTCCGGGAGGAATGGACGGCGGAGGTTTTCGACGCGGAGCTGATGCGGTTCCATAACATTGAAGAAGAGATGGTTCAATTACTGCAGATCGCAATGTCCTGCGTTTCGACGGTTCCCGATCAGCGGCCGGCCATGCCGGAAGTTGTACGGATGATCGAAGATATGAACAGTCATAGAAGTGAGACCGATGACGGGTTGCGCCAGTCTTCCGATGACCCTTCGAAAGGATCGGATGTGAACACGCCGCCGGCGGAATCTAGAACTCCGCCGAGAGTGACGCCGTAG 1959 52.94 MAAAISLCSVFLLLLLTRWVDSEPTQDRQALLDFFSKTPHANRVQWNTSNSVCNWVGVECDSNQSFVYSLRLPGVGLVGPIPANTIGKLTQLRVLSLRSNRLSGEIPSDFSNLVMLRNLYLQDNAFAGEFPSSLTRLTRLTRLDLSSNEFSGPIPPSVDNLTHLSGIFLQNNGFSGSLPSISAVNLTNFNVSNNKLNGSIPKSLAKFPTSSFAGNLDLCGGPFPPCNPFPPSPSPSQNPSPAHKKSKKLSTAAIIGIIIGAVFAAFLLLLVLILCIRRRSRGQQTKSAKPPSAVGTAARSIPVAEAGTSSSKDDITGGSVEATERNKLVFFEGGIYNFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKKEFETQMEILGKIKHENVVPLRAFYFSKDEKLLVYDYISTGSLSASLHGSRGSGRTPLDWDSRMRIALSAGRGLAHLHLAGKVVHGNIKSSNILLRPDHDACISDFGLNPLFGTATPPNRVAGYRAPEVVETRKVTFKSDVYSYGVLLLELLTGKAPNQQSLGEEGIDLPRWVQSVVREEWTAEVFDAELMRFHNIEEEMVQLLQIAMSCVSTVPDQRPAMPEVVRMIEDMNSHRSETDDGLRQSSDDPSKGSDVNTPPAESRTPPRVTP 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3111452 3116207 + CmPI595203_11g002570.1 Cmu11g0257 428779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0257 652 SUPERFAMILY L domain-like 25 207 - -
Cmu11g0257 652 FunFam Probable inactive receptor kinase RLK902 24 182 - -
Cmu11g0257 652 Pfam Protein kinase domain 349 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0257 652 MobiDBLite consensus disorder prediction 303 317 - -
Cmu11g0257 652 MobiDBLite consensus disorder prediction 613 652 - -
Cmu11g0257 652 PANTHER OS05G0588300 PROTEIN 7 618 IPR050994 -
Cmu11g0257 652 Gene3D Ribonuclease Inhibitor 186 226 IPR032675 -
Cmu11g0257 652 ProSiteProfiles Protein kinase domain profile. 345 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0257 652 FunFam pollen receptor-like kinase 1 315 419 - -
Cmu11g0257 652 MobiDBLite consensus disorder prediction 284 318 - -
Cmu11g0257 652 Gene3D Transferase(Phosphotransferase) domain 1 420 633 - -
Cmu11g0257 652 MobiDBLite consensus disorder prediction 630 644 - -
Cmu11g0257 652 Gene3D Phosphorylase Kinase; domain 1 313 419 - -
Cmu11g0257 652 CDD STKc_IRAK 351 613 - -
Cmu11g0257 652 Pfam Leucine Rich Repeat 185 206 IPR001611 GO:0005515(InterPro)
Cmu11g0257 652 Pfam Leucine Rich Repeat 91 113 IPR001611 GO:0005515(InterPro)
Cmu11g0257 652 Pfam Leucine Rich Repeat 139 161 IPR001611 GO:0005515(InterPro)
Cmu11g0257 652 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 420 624 - -
Cmu11g0257 652 Gene3D Ribonuclease Inhibitor 24 182 IPR032675 -
Cmu11g0257 652 SUPERFAMILY Protein kinase-like (PK-like) 349 610 IPR011009 -
Cmu11g0257 652 MobiDBLite consensus disorder prediction 613 629 - -
Cmu11g0257 652 Pfam Leucine rich repeat N-terminal domain 25 61 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g0675 Cmu-Chr4:20856366 Cmu11g0257 Cmu-Chr11:3111452 7.40E-137 dispersed
Cmu04g1087 Cmu-Chr4:25473480 Cmu11g0257 Cmu-Chr11:3111452 3.50E-130 dispersed
Cmu05g0970 Cmu-Chr5:8840476 Cmu11g0257 Cmu-Chr11:3111452 1.50E-120 dispersed
Cmu05g1229 Cmu-Chr5:12851311 Cmu11g0257 Cmu-Chr11:3111452 1.10E-123 dispersed
Cmu07g0522 Cmu-Chr7:6085620 Cmu11g0257 Cmu-Chr11:3111452 2.00E-69 dispersed
Cmu10g1713 Cmu-Chr10:19825922 Cmu11g0257 Cmu-Chr11:3111452 9.30E-72 dispersed
Cmu10g2944 Cmu-Chr10:35730262 Cmu11g0257 Cmu-Chr11:3111452 3.90E-73 dispersed
Cmu11g0135 Cmu-Chr11:1914901 Cmu11g0257 Cmu-Chr11:3111452 7.50E-66 dispersed
Cmu11g0257 Cmu-Chr11:3111452 Cmu11g1388 Cmu-Chr11:26049690 2.50E-48 dispersed
Cmu01g1648 Cmu-Chr1:30208925 Cmu11g0257 Cmu-Chr11:3111452 9.00E-70 transposed
Cmu02g1894 Cmu-Chr2:32858409 Cmu11g0257 Cmu-Chr11:3111452 4.60E-140 transposed
Cmu07g0717 Cmu-Chr7:14136578 Cmu11g0257 Cmu-Chr11:3111452 1.50E-77 transposed
Cmu09g1808 Cmu-Chr9:34247091 Cmu11g0257 Cmu-Chr11:3111452 9.20E-64 transposed
Cmu10g2669 Cmu-Chr10:33492269 Cmu11g0257 Cmu-Chr11:3111452 6.70E-92 transposed
Cmu11g0257 Cmu-Chr11:3111452 Cmu06g1097 Cmu-Chr6:21316965 8.60E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75909 PF00069 Pkinase 4.80E-37 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0257 - - - 0.0