Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0276 ATGATGGCCGGAAGCATAGGCAAAGACGAGTGGTCCGATTACGACAGTAGTTGCTCCTCCTCCGTAACCGTTCCAGACTCGAGCCGTAGCTGGATGAGCAACCTCAGCTTTGGAAGCCGGCGTCGCAGCAGTAGCTCAGCCGCAGAAGGCGGCGTGGAGATGAATAATACGACGACGACGACGACGACATTAGCATTACAAATGATGAAGCCACACAAGGCGAACGAAGTGGGATGGGAGGCCATGCGGTGGCTCCGGGGAGTGAAAGGGGAAGTGGGGTTGGAGCATTTCCGGCTGCTACGGCGGGTGGGGAGCGGAGATATTGGGAATGTTTATTTATGTGAGATAAGGAATCCAATGGTGGGGTTGCCAAAGTGCTTTTATGCAATGAAAGTGGTTGATAGAGAAGCGGTTTGTGTGAGGAATAAAGAGAGAAGGGCAGATATGGAAAAGGAAATTTTGAAAGTGCTTGATCATCCTTTTTTGCCTACTCTTTATGCGGATTTTGAAGCTTCTCATTATTCTTGTTTGCTTATGGAGTTTTGTCCTGGTGGTGATTTGTATGCTGCTCGCCAACGTCAACCCAATAAACGTTTCTCCATTTCTTCTGCTAAATTTTATGCGGCGGAGATAATTTTAGCTTTAGAGTATTTGCACATGATGGGCATAATTTACCGAGATTTAAAGCCGGAAAACGTTTTAGTTAGAGAAGATGGCCACATAATGCTCTCGGATTTCGATCTCTGCCTCAAATGCGACGTCGTTCCAAAGCTCATCCGTTGCCGGACCACCGCCTCCGACGTCACCACCGAACGCCACGTCAGATCCTACTCCACCTCAACCACCTCCTGCGCCGCCGCCCCCATTCAACCCGTCCTCTCCTGTTTCTCCATCGCCCGTCGCAAAAAATCCACCACCGTCACCACCATCACCGAACACGCCTCCGCCGCACCCGCCGCCGTGTACGGCGACGACAGCGACGGGGACGGCGAAGAATTCGACCCAGAACCAGAATTAATAGCGGAACCAATAAATGCTCGGTCGAAATCATTCGTTGGAACCCATGAGTATTTGGCGCCGGAGGTGATTTCCGGCCAAGGGCACGGCAGCGGTGTGGATTGGTGGACATTGGGAATATTCTTATACGAAATGTTGTACGGAAAGACACCATTTAAAGGGGAAAACAACGAGAAGACATTAATGAACATTTTGAAGCAGCCATTAAGGTTTCCAAGAATTGGGTTTAGTAGCAGCAAAGAGTATGAAGAAATGGTGAAAGTTGAGGATTTAATCAAGAAGCTTTTGGTGAAAAATCCCAAAAAAAGAATTGGAAGTTTAAAGGGTTCAGTTGAAATCAAAAGACATGATTTTTTCAAAGGACTGAATTGGGCTCTAATTCGATCCGTACGACCTCCACAAATCCCAAACAATAACCTTAATTACTCCAAATACCCTTCTAATTACTTACCCAAATTGAGCAAGAAACAAAGACAACAACCTTACCAAATCCCTAATCACCATTTTGATTATTTCTAA 1536 46.94 MMAGSIGKDEWSDYDSSCSSSVTVPDSSRSWMSNLSFGSRRRSSSSAAEGGVEMNNTTTTTTTLALQMMKPHKANEVGWEAMRWLRGVKGEVGLEHFRLLRRVGSGDIGNVYLCEIRNPMVGLPKCFYAMKVVDREAVCVRNKERRADMEKEILKVLDHPFLPTLYADFEASHYSCLLMEFCPGGDLYAARQRQPNKRFSISSAKFYAAEIILALEYLHMMGIIYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLIRCRTTASDVTTERHVRSYSTSTTSCAAAPIQPVLSCFSIARRKKSTTVTTITEHASAAPAAVYGDDSDGDGEEFDPEPELIAEPINARSKSFVGTHEYLAPEVISGQGHGSGVDWWTLGIFLYEMLYGKTPFKGENNEKTLMNILKQPLRFPRIGFSSSKEYEEMVKVEDLIKKLLVKNPKKRIGSLKGSVEIKRHDFFKGLNWALIRSVRPPQIPNNNLNYSKYPSNYLPKLSKKQRQQPYQIPNHHFDYF 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3292389 3294419 - CmPI595203_11g002760.1 Cmu11g0276 428798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0276 511 FunFam protein kinase PINOID 182 250 - -
Cmu11g0276 511 Gene3D Transferase(Phosphotransferase) domain 1 346 476 - -
Cmu11g0276 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 223 235 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0276 511 ProSiteProfiles Protein kinase domain profile. 97 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0276 511 MobiDBLite consensus disorder prediction 12 56 - -
Cmu11g0276 511 PANTHER FLIPPASE KINASE 1-RELATED 18 493 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu11g0276 511 MobiDBLite consensus disorder prediction 1 56 - -
Cmu11g0276 511 SUPERFAMILY Protein kinase-like (PK-like) 79 494 IPR011009 -
Cmu11g0276 511 Pfam Protein kinase domain 98 252 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0276 511 Pfam Protein kinase domain 348 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0276 511 FunFam serine/threonine-protein kinase D6PK-like 346 476 - -
Cmu11g0276 511 Gene3D Phosphorylase Kinase; domain 1 95 185 - -
Cmu11g0276 511 SMART serkin_6 97 458 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0276 511 CDD STKc_phototropin_like 96 475 - -
Cmu11g0276 511 Gene3D Transferase(Phosphotransferase) domain 1 186 253 - -
Cmu11g0276 511 FunFam protein kinase PINOID 2 95 181 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g1239 Cmu-Chr3:7185350 Cmu11g0276 Cmu-Chr11:3292389 7.70E-108 dispersed
Cmu07g1051 Cmu-Chr7:25374442 Cmu11g0276 Cmu-Chr11:3292389 7.10E-93 dispersed
Cmu10g2144 Cmu-Chr10:27438753 Cmu11g0276 Cmu-Chr11:3292389 6.50E-114 dispersed
Cmu11g0276 Cmu-Chr11:3292389 Cmu05g0633 Cmu-Chr5:5417691 2.10E-21 dispersed
Cmu11g0276 Cmu-Chr11:3292389 Cmu01g2066 Cmu-Chr1:33628500 7.10E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75910 PF00069 Pkinase 3.30E-31 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0276 K08286 - csv:101202905 856.284