Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0292 ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAAGAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGGGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAACTCCGCCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTACCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTGTGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTCTAA 735 51.97 MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDKNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSASATSAAAGAASASGGDDDGGQLRKNKKSGCFTGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNCGNPSEIIQVQDHDQGKQPFYPL 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3444758 3446170 - CmPI595203_11g002920.1 Cmu11g0292 428814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0292 244 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 138 IPR050913 -
Cmu11g0292 244 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0292 244 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0292 244 Coils Coil 197 217 - -
Cmu11g0292 244 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0292 244 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0292 244 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0292 244 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0292 244 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0292 244 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Cmu11g0292 244 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1297 Cmu-Chr8:25232813 Cmu11g0292 Cmu-Chr11:3444758 1.40E-25 dispersed
Cmu09g0308 Cmu-Chr9:2935563 Cmu11g0292 Cmu-Chr11:3444758 9.80E-25 dispersed
Cmu11g0292 Cmu-Chr11:3444758 Cmu11g1539 Cmu-Chr11:27710984 8.60E-18 dispersed
Cmu11g0292 Cmu-Chr11:3444758 Cmu05g1725 Cmu-Chr5:27415672 3.60E-56 wgd
Cmu11g0292 Cmu-Chr11:3444758 Cmu05g0208 Cmu-Chr5:1760113 1.20E-14 wgd
Cmu11g0292 Cmu-Chr11:3444758 Cmu06g1175 Cmu-Chr6:22567054 6.30E-61 wgd
Cmu11g0292 Cmu-Chr11:3444758 Cmu07g1247 Cmu-Chr7:27783552 7.50E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7112 PF00847 AP2 3.50E-12 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0292 - - - 0.0