Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0292 | ATGGTGCCATCAAAGAAGTTTAGAGGTGTTAGGCAAAGACATTGGGGATCTTGGGTCTCTGAAATTCGTCACCCACTTCTGAAGAGAAGGGTTTGGTTGGGGACATTTGAGACGGCGGAGGAAGCAGCGAGAGCCTACGACCAGGCCGCCGTGTTAATGAGCGGCCGGAACGCAAAAACCAACTTCCCGATGAGCCAAACGGCTGCGCCGGAATTAGAAAAACCCGACAAGAATAATAATATCACTTCTCCAAAGGGCTTATCGGAGATTCTCCACGCCAAGCTTCGAAAATGCAGCAAGGCACCGTCGCCGTCGATGACGTGTCTCCGACTCGACACTGAAAATTCCCACATCGGCGTTTGGCAGAAACGGGCCGGCCAACGCTCCGACTCCAGCTGGGTCATGACCGTTCATCTCGGAAAAACCAACTCCGCCTCCGCCACCTCCGCCGCCGCCGGAGCCGCATCCGCATCCGGCGGCGACGACGACGGTGGGCAGTTGAGGAAGAATAAAAAAAGTGGGTGTTTTACCGGTTTGATCTCGTCGGAAGGTGGTGCCGGTGCATTAATGGCGGCGAGTGGGACCCACATGAAGAACTTGGAGATGGATGAAGAAGAAGAAAGAATTGCATTGCAAATGATTGAAGAGTTGCTGAGCAGAAATTGTGGTAACCCATCTGAAATTATTCAAGTTCAAGATCATGATCAAGGGAAGCAACCTTTTTACCCTCTCTAA | 735 | 51.97 | MVPSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAVLMSGRNAKTNFPMSQTAAPELEKPDKNNNITSPKGLSEILHAKLRKCSKAPSPSMTCLRLDTENSHIGVWQKRAGQRSDSSWVMTVHLGKTNSASATSAAAGAASASGGDDDGGQLRKNKKSGCFTGLISSEGGAGALMAASGTHMKNLEMDEEEERIALQMIEELLSRNCGNPSEIIQVQDHDQGKQPFYPL | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3444758 | 3446170 | - | CmPI595203_11g002920.1 | Cmu11g0292 | 428814 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0292 | 244 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 5 | 138 | IPR050913 | - | |
Cmu11g0292 | 244 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0292 | 244 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0292 | 244 | Coils | Coil | 197 | 217 | - | - | |
Cmu11g0292 | 244 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0292 | 244 | CDD | AP2 | 5 | 65 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0292 | 244 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0292 | 244 | Pfam | AP2 domain | 6 | 50 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0292 | 244 | Gene3D | AP2/ERF domain | 5 | 65 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0292 | 244 | FunFam | Ethylene-responsive transcription factor 2 | 5 | 64 | - | - | |
Cmu11g0292 | 244 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1297 | Cmu-Chr8:25232813 | Cmu11g0292 | Cmu-Chr11:3444758 | 1.40E-25 | dispersed | |
Cmu09g0308 | Cmu-Chr9:2935563 | Cmu11g0292 | Cmu-Chr11:3444758 | 9.80E-25 | dispersed | |
Cmu11g0292 | Cmu-Chr11:3444758 | Cmu11g1539 | Cmu-Chr11:27710984 | 8.60E-18 | dispersed | |
Cmu11g0292 | Cmu-Chr11:3444758 | Cmu05g1725 | Cmu-Chr5:27415672 | 3.60E-56 | wgd | |
Cmu11g0292 | Cmu-Chr11:3444758 | Cmu05g0208 | Cmu-Chr5:1760113 | 1.20E-14 | wgd | |
Cmu11g0292 | Cmu-Chr11:3444758 | Cmu06g1175 | Cmu-Chr6:22567054 | 6.30E-61 | wgd | |
Cmu11g0292 | Cmu-Chr11:3444758 | Cmu07g1247 | Cmu-Chr7:27783552 | 7.50E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7112 | PF00847 | AP2 | 3.50E-12 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0292 | - | - | - | 0.0 |