Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0298 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCACTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 579 43.35 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3502136 3505813 - CmPI595203_11g002980.1 Cmu11g0298 428820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0298 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Cmu11g0298 192 CDD HMG-box_SF 120 156 - -
Cmu11g0298 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cmu11g0298 192 SUPERFAMILY HMG-box 108 159 IPR036910 -
Cmu11g0298 192 Gene3D High mobility group box domain 102 161 IPR036910 -
Cmu11g0298 192 FunFam axial regulator YABBY 5-like 104 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1726 Cmu-Chr8:28652809 Cmu11g0298 Cmu-Chr11:3502136 9.00E-18 dispersed
Cmu10g1134 Cmu-Chr10:3966563 Cmu11g0298 Cmu-Chr11:3502136 3.20E-39 dispersed
Cmu02g2236 Cmu-Chr2:35963406 Cmu11g0298 Cmu-Chr11:3502136 1.20E-48 transposed
Cmu05g2416 Cmu-Chr5:33299877 Cmu11g0298 Cmu-Chr11:3502136 1.30E-22 transposed
Cmu05g2432 Cmu-Chr5:33413880 Cmu11g0298 Cmu-Chr11:3502136 1.30E-22 transposed
Cmu11g0298 Cmu-Chr11:3502136 Cmu06g1183 Cmu-Chr6:22736571 6.30E-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7113 PF04690 YABBY 5.30E-71 CL0114 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0298 K25796 - csv:101219877 387.882