Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0298 | ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCACTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTACAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 579 | 43.35 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSTTDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3502136 | 3505813 | - | CmPI595203_11g002980.1 | Cmu11g0298 | 428820 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0298 | 192 | Pfam | YABBY protein | 8 | 166 | IPR006780 | GO:0007275(InterPro) | |
Cmu11g0298 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
Cmu11g0298 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 177 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Cmu11g0298 | 192 | SUPERFAMILY | HMG-box | 108 | 159 | IPR036910 | - | |
Cmu11g0298 | 192 | Gene3D | High mobility group box domain | 102 | 161 | IPR036910 | - | |
Cmu11g0298 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu08g1726 | Cmu-Chr8:28652809 | Cmu11g0298 | Cmu-Chr11:3502136 | 9.00E-18 | dispersed | |
Cmu10g1134 | Cmu-Chr10:3966563 | Cmu11g0298 | Cmu-Chr11:3502136 | 3.20E-39 | dispersed | |
Cmu02g2236 | Cmu-Chr2:35963406 | Cmu11g0298 | Cmu-Chr11:3502136 | 1.20E-48 | transposed | |
Cmu05g2416 | Cmu-Chr5:33299877 | Cmu11g0298 | Cmu-Chr11:3502136 | 1.30E-22 | transposed | |
Cmu05g2432 | Cmu-Chr5:33413880 | Cmu11g0298 | Cmu-Chr11:3502136 | 1.30E-22 | transposed | |
Cmu11g0298 | Cmu-Chr11:3502136 | Cmu06g1183 | Cmu-Chr6:22736571 | 6.30E-72 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7113 | PF04690 | YABBY | 5.30E-71 | CL0114 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0298 | K25796 | - | csv:101219877 | 387.882 |