Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0313 ATGGAGGAAAATGAAAACTGTGGCTGTTGGGCTGTCCTTAAACGCACCGTTTCAGATGTCTCCAAATCTTCCCCTTCTTCCAAACATTCCCCCAACTCCATTCCTCGCCTTACCTTACTTTACGATTCAGCTACCGAGACCCGATATTTAAACGCAAGCGACCGAGATTTGTGTGCGCCGGCCGAAGCTCGGCTATCCTTCGACAATGCTCCGCCGCTGCCGCCGACGAGGTTAGAGGACAAATTTAAACGCCAGTTACTGAAATTTTCATTTCAGGAACTAAGATCGGCGACCGGAAATTTCCGGCCGGATAGCATTCTGGGAGAAGGAGGGTTTGGATTCGTTTTCAAAGGATGGATTGAAGAGAATGGGACGGCGCCGGCCAAACCTGGATCAGGAATCACAGTCGCCGTCAAAAGCTTGAAACCGGATGGTCTTCAAGGACACAGAGAATGGGAGGCTGAGGTTAGCTTTCTTGGACAGCTTCACCATCCCAATCTTGTTAAACTTATTGGGTACTGTATTGAAGATGATCAAAGGCTTCTTGTATATGAATTTATGACGCGTGGTAGTCTTGAAAACCATCTTTTCAGAAGGACTATACCTCTTCCATGGTCAAACAGGATTAAAATTGCACTTGCTGCAGCCAAAGGCTTGGCCTTCCTCCACAATGGTCCGGAACCTGTCATATATAGAGATTTCAAAACATCAAACATATTGCTTGATACAGAGTACAATGCGAAGCTTTCGGATTTTGGTTTGGCAAAGGCTGGGCCTCAAGGAGACAAAACACATGTTTCCACCAGAGTAGTTGGAACATATGGCTATGCTGCGCCAGAATATCTAATGACAGGGCATTTGACATCAAAGAGTGATGTCTATAGCTTCGGTGTTGTCCTACTCGAGATCTTAACGGGGAGGAGATCAATGGACAAGAAACGTCCAAGTGGTGAGCAAAACCTAGTGTCATGGGCTCGACCATATTTAGATGACAAAAGGAAGCTTTACCATATAGTGGACCCTCGCTTGGAGCTTAACTACTCCATCCAGGGGGTTCAAAAAGTCTCTCGACTAGCTTCTCACTGCATCAGTAGAGATCCAAAATCTCGTCCTACCATGGATGAAGTTGTCAAGGTTCTCATTCCACTACAAGATCTTAACGACCTTGCCATCCTAGCATATCATTCACGCCTGTCTCAGCAAGGTCGACGAAAGAAGAAATCAGATGGACTACACCAGTTAACATACACCCAGTCAAGAAATATTAGAACCTCTCCTTTGAATGTTGGAGTTCATCGTCGTCGGTAA 1308 45.8 MEENENCGCWAVLKRTVSDVSKSSPSSKHSPNSIPRLTLLYDSATETRYLNASDRDLCAPAEARLSFDNAPPLPPTRLEDKFKRQLLKFSFQELRSATGNFRPDSILGEGGFGFVFKGWIEENGTAPAKPGSGITVAVKSLKPDGLQGHREWEAEVSFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTIPLPWSNRIKIALAAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYLMTGHLTSKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLDDKRKLYHIVDPRLELNYSIQGVQKVSRLASHCISRDPKSRPTMDEVVKVLIPLQDLNDLAILAYHSRLSQQGRRKKKSDGLHQLTYTQSRNIRTSPLNVGVHRRR 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3677060 3683502 - CmPI595203_11g003130.1 Cmu11g0313 428835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0313 435 FunFam Serine/threonine-protein kinase BIK1 73 186 - -
Cmu11g0313 435 CDD STKc_IRAK 107 383 - -
Cmu11g0313 435 PANTHER OS01G0588500 PROTEIN-RELATED 80 384 IPR050823 -
Cmu11g0313 435 FunFam Probable serine/threonine-protein kinase PBL8 187 400 - -
Cmu11g0313 435 ProSitePatterns Protein kinases ATP-binding region signature. 107 139 IPR017441 GO:0005524(InterPro)
Cmu11g0313 435 Gene3D Transferase(Phosphotransferase) domain 1 187 395 - -
Cmu11g0313 435 ProSiteProfiles Protein kinase domain profile. 101 398 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0313 435 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0313 435 SUPERFAMILY Protein kinase-like (PK-like) 84 383 IPR011009 -
Cmu11g0313 435 Pfam Protein tyrosine and serine/threonine kinase 105 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0313 435 Gene3D Phosphorylase Kinase; domain 1 75 186 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1763 Cmu-Chr9:33759929 Cmu11g0313 Cmu-Chr11:3677060 8.30E-142 dispersed
Cmu09g1889 Cmu-Chr9:34999299 Cmu11g0313 Cmu-Chr11:3677060 2.20E-119 dispersed
Cmu09g1890 Cmu-Chr9:35009735 Cmu11g0313 Cmu-Chr11:3677060 4.70E-102 dispersed
Cmu10g0870 Cmu-Chr10:771922 Cmu11g0313 Cmu-Chr11:3677060 1.40E-97 dispersed
Cmu10g1053 Cmu-Chr10:2662981 Cmu11g0313 Cmu-Chr11:3677060 1.30E-82 dispersed
Cmu10g2562 Cmu-Chr10:32469534 Cmu11g0313 Cmu-Chr11:3677060 3.80E-62 dispersed
Cmu10g2973 Cmu-Chr10:35937209 Cmu11g0313 Cmu-Chr11:3677060 2.40E-55 dispersed
Cmu11g0313 Cmu-Chr11:3677060 Cmu11g1145 Cmu-Chr11:21663836 5.50E-108 dispersed
Cmu11g0313 Cmu-Chr11:3677060 Cmu05g0168 Cmu-Chr5:1461590 8.90E-47 wgd
Cmu11g0313 Cmu-Chr11:3677060 Cmu06g1197 Cmu-Chr6:22952043 1.10E-196 wgd
Cmu11g0313 Cmu-Chr11:3677060 Cmu08g1295 Cmu-Chr8:25209838 4.00E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75911 PF07714 PK_Tyr_Ser-Thr 8.60E-49 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0313 - - - 0.0