Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0338 ATGCTGGGCGCGTTGGGACACGCGCCTTTCATCTATTTTCTCTCTGCTTTTCCTCCTCCCTCCTCTGTTCCAAATCCCAACCTTCCTCGCTTCTCTCTAATGGCTATCTCTTCTCGAATTGCCGTCGTCGGCGACGTCCATGGGCATTGGGATTTACGAGAAGATTCCAAGGCACTTCAACTATTGCAGCCAGATTTAGTGCTCTTTACAGGTGACTTTGGCGAAGAGAATGTTGAACTGGTCCAAAGTATTGCAGATCTTAAATTTGCAAAAGCAGCTATATTGGGAAACCATGATGCTTGGTTTACACCGTGTTTTTCTCACGAGAAGAAGGATGGCGTTCAACTTCAGTTGGAATGTCTTGGCGAGAGTCATATTGGTTACCGACGTATGGACTTTCCTCAGCAAAAACTAAGCATTGTTGGTGGACGACCTTTTTCTCATGGTGGAAAGGGGATGTTTCGGAGACAACTACTTTCTGCAAGATATGGTGTCAAAGACATGAAAACAAGTGCTAAGAGAATATACGAAGCTGCGATAGGCGCACCCGAGGATCATTTGGTTATAATTCTTGCACACAATGGGCCTACAGGTCTTGGTTCTTGTGCAAATGACATTTGTGGAAAAGATTGGGAATTTGGAGGTGGAGACTATGGTGATGAAGATCTAGCACAAGCCATATCTCAGTTGAAAGAGAATGGAAAGTTTCATGTCCCTCCTTTGGTTGTGTTCGGGCATATGCATAAAGAACTCGCATACGGTGGTCATCGTAAAATGATAGTCGTTACAGCTGACAACACCATTTACCTTAATGGAGCTGTCGTTCCGAGGGTTAACAGTTACTCCGGCGAAGAAGGCAAGGTAAAAGGAAACTTCACAAGTACCGGAACCTCGTCTTCGCAATCTGTTTCAAGAGGCACAAAGCGAGCATTCACTGTAGTTGACATTTCAGATAGGAAGGTGGATAAGATTACTGAAAGTTGGATTTCTGTTGTTGGTGATGAGATCTGCTTGGATGAAGCACGTTTGATTTATCAAAGTGGAATTGAAGCAAAAAGGAAAATTTGGTATAATACACAAACCCAGAAGGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGGGAGATTGAAATTTAAGCTTTGTTTTTTTGGGCCTTGTTCTTCTTGTGGGTCGTTTGGTTTTTTTATTTTCACCATGACTGTGGAGGTTGGAAGGGCTAATTTGGTGGGTGAAAATGAGGATATGGATCAATTTCCTATTGGTATGCGTATTCTTGCTGTGGATGATGACCCCATTTGCCTTAAGGTTTTGGAGAATTTGCTTCGTAAATGCCAATATCATGTTACAACAACCAATCAGGCGGTTCAGGCACTTAAAATGTTGAGGGAGAACAAAAACAGGTTTGACCTGGTTATCAGCGATGTTAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTTATCATGTTGTCTGCGCATAGCAATACCGAACTTGTAAAGAAGGGAGTTATTCATGGGGCGTGTGACTATTTGCTGAAACCTGTTCGAATTGAAGAATTGAAGAATATATGGCAACATGTCCTTCGGAGAAAGAAGCCCTCTGCTAAGAACCAAAATAAGTGCACTAATGGAAATAACACGAGTCAAAGTGTTGAAGGTGCAAAAGGTTTTCCACCTGCAATCAGTACTGATAATGAGAAACCTGGTAAAAGGCAAAAAGACCAGGACGACGACGAGGAAGGAGGTGAAGAAGACAGTACTTATGAGAATGATGACTCCTCAACCCAAAAAAAGCCAAGGGTAAATTGGTATGACGGAGATGAAAATTTGCACAGGAAGTTTGTGGCAGCTGTTAACTTTTTGGGCTATGAAAAGGCTGTTCCTAAGAAGATACTTGATCTGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCCAGCCATCTTCAGAAATACAGACAATACCTTAAAAAACTGTGTAGTGAGGAAGCTCAGCAATGTAACATGATGGGTGCATTTGGAGGTAAACAAACCTCCTTCAGGCCCATGGCTTCACTCAATGGATTTTCAATGACTGGAACAGGAAGGCTCTCAAATGCTACATTCTCGCCGTATCCCTCTCAAGAAATAGTTGGTCAATTAAACTCTACTTCTGGATTGAGTTTACATGGAATTGCTTCCTCTGGAATGTTCCAGTCCCATAAATTAAATAGCTCATTAAATACCTTTGGGAAATCCCATCCAGCTTTCTTGCTTGCCAACCAACCTCCACACACATTCAATGGTATTTCAACGTCATCGGATCACATCCAGTTGCATCGGGATAAATGCACTCTGTCATTCAAAGAGTCTAATTCGATAAATGATGCCTCAAGTTTTACAGTTTCCACCAGCTTCCCTGATGCTAGAATGGCTGTTGGTAGCTCAAGCAATTATGATTTCGGTTCGAGCCATTTGTTGATGTTACGAGGACAGAAGCAACAGATTCAAGGTGGTGGAGAATTTGGAGGTCAGTCTTCTCTTAAGGTAACTCTAGACAACCCAGAACCGTTAGCAAACGGCACAGGTGTTTCTAATATTTTGGGCCATGGTGAGTCTAACAAAAACTGGCCGGGATCAATCCAGCTGCCCAAGTTTTCATCTAATGTCTCAGTCACTGGAATTTACCCTCCTGCTGGAATGCCTGCTACTTATTTGACAATTTCCTCGGCTCAGCCTGATAATGACAACTTTCCTGTTGGTTTTCCTTCAACAAGTGTGGATTCAAGTTCTCAGCTTGATTTAAGAGGGGACACACAATGCTATGAAGAACTAATTGGTAGTGTTGTTGAAGCCATGAATGGAAGATCAAAACAACAATGGGATGCAGCTAAACAGGATTATTATGGCAACCATAGTTCCATTGTGAGAGACTCTCTAGTTTCTGGGAATAGTGTTGTAGATCCCTTGAACCAGATGGCAAATCAGAACAATGCAATCTGTCTAGAAAACATTGGAAGCTCTTCGACTAACCAATTGAATGATGGTGCTCCAACCTTCATTCACAATGGTGCGGAAATATCTGCAATGGACACTTGGATGAACTACGATGGAAAAATTCTCATGGATCAAACAAAGCTACAAAGTGGATTTGCAAATTCTAGTTTTAATTCCTTGGATGAATTGGTTAATGCTCTGTCAAAACAGGATCAAGATCAATCCATTCAAATAAATGAAGAATTTGGATTTGATGCCCAATCTCTCGGGTCGTCATTTCCATTTGGATTAATAAAGAGCAGACAGCAAGCTGAAAACTCCCAATATGCAAAAGTCGTAACATCAGATTTTACTAACATCACTTACCCAAGGGAATCAACCTGGTGCTAA 3396 41.93 MLGALGHAPFIYFLSAFPPPSSVPNPNLPRFSLMAISSRIAVVGDVHGHWDLREDSKALQLLQPDLVLFTGDFGEENVELVQSIADLKFAKAAILGNHDAWFTPCFSHEKKDGVQLQLECLGESHIGYRRMDFPQQKLSIVGGRPFSHGGKGMFRRQLLSARYGVKDMKTSAKRIYEAAIGAPEDHLVIILAHNGPTGLGSCANDICGKDWEFGGGDYGDEDLAQAISQLKENGKFHVPPLVVFGHMHKELAYGGHRKMIVVTADNTIYLNGAVVPRVNSYSGEEGKVKGNFTSTGTSSSQSVSRGTKRAFTVVDISDRKVDKITESWISVVGDEICLDEARLIYQSGIEAKRKIWYNTQTQKEEEEEEEEEEGRLKFKLCFFGPCSSCGSFGFFIFTMTVEVGRANLVGENEDMDQFPIGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENKNRFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSNTELVKKGVIHGACDYLLKPVRIEELKNIWQHVLRRKKPSAKNQNKCTNGNNTSQSVEGAKGFPPAISTDNEKPGKRQKDQDDDEEGGEEDSTYENDDSSTQKKPRVNWYDGDENLHRKFVAAVNFLGYEKAVPKKILDLMNVEGLTRENVASHLQKYRQYLKKLCSEEAQQCNMMGAFGGKQTSFRPMASLNGFSMTGTGRLSNATFSPYPSQEIVGQLNSTSGLSLHGIASSGMFQSHKLNSSLNTFGKSHPAFLLANQPPHTFNGISTSSDHIQLHRDKCTLSFKESNSINDASSFTVSTSFPDARMAVGSSSNYDFGSSHLLMLRGQKQQIQGGGEFGGQSSLKVTLDNPEPLANGTGVSNILGHGESNKNWPGSIQLPKFSSNVSVTGIYPPAGMPATYLTISSAQPDNDNFPVGFPSTSVDSSSQLDLRGDTQCYEELIGSVVEAMNGRSKQQWDAAKQDYYGNHSSIVRDSLVSGNSVVDPLNQMANQNNAICLENIGSSSTNQLNDGAPTFIHNGAEISAMDTWMNYDGKILMDQTKLQSGFANSSFNSLDELVNALSKQDQDQSIQINEEFGFDAQSLGSSFPFGLIKSRQQAENSQYAKVVTSDFTNITYPRESTWC 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3883216 3898790 - CmPI595203_11g003380.1 Cmu11g0338 428860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0338 1131 FunFam Two-component response regulator 604 670 - -
Cmu11g0338 1131 SMART REC_2 422 534 IPR001789 GO:0000160(InterPro)
Cmu11g0338 1131 Pfam Calcineurin-like phosphoesterase 39 249 IPR004843 GO:0016787(InterPro)
Cmu11g0338 1131 Pfam Response regulator receiver domain 424 532 IPR001789 GO:0000160(InterPro)
Cmu11g0338 1131 CDD MPP_NostocDevT-like 38 277 IPR027629 -
Cmu11g0338 1131 Gene3D - 604 670 - -
Cmu11g0338 1131 MobiDBLite consensus disorder prediction 547 563 - -
Cmu11g0338 1131 NCBIfam TIGR04168 family protein 59 292 IPR027629 -
Cmu11g0338 1131 NCBIfam myb-like DNA-binding domain, SHAQKYF class 608 664 IPR006447 GO:0003677(InterPro)
Cmu11g0338 1131 SUPERFAMILY CheY-like 421 547 IPR011006 -
Cmu11g0338 1131 ProSiteProfiles Response regulatory domain profile. 423 538 IPR001789 GO:0000160(InterPro)
Cmu11g0338 1131 PANTHER CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN 30 348 IPR027629 -
Cmu11g0338 1131 Gene3D - 35 323 IPR029052 -
Cmu11g0338 1131 Gene3D - 422 572 - -
Cmu11g0338 1131 SUPERFAMILY Homeodomain-like 606 668 IPR009057 -
Cmu11g0338 1131 SUPERFAMILY Metallo-dependent phosphatases 39 270 IPR029052 -
Cmu11g0338 1131 CDD REC_typeB_ARR-like 424 538 - -
Cmu11g0338 1131 MobiDBLite consensus disorder prediction 539 613 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1247 Cmu-Chr4:26954695 Cmu11g0338 Cmu-Chr11:3883216 4.00E-15 dispersed
Cmu06g1276 Cmu-Chr6:23871806 Cmu11g0338 Cmu-Chr11:3883216 8.70E-156 dispersed
Cmu06g1390 Cmu-Chr6:25059214 Cmu11g0338 Cmu-Chr11:3883216 6.90E-46 dispersed
Cmu06g1392 Cmu-Chr6:25077144 Cmu11g0338 Cmu-Chr11:3883216 1.10E-51 dispersed
Cmu08g1681 Cmu-Chr8:28379405 Cmu11g0338 Cmu-Chr11:3883216 7.50E-64 dispersed
Cmu09g0525 Cmu-Chr9:4826130 Cmu11g0338 Cmu-Chr11:3883216 7.80E-19 dispersed
Cmu09g1197 Cmu-Chr9:13588201 Cmu11g0338 Cmu-Chr11:3883216 2.10E-18 dispersed
Cmu10g1040 Cmu-Chr10:2464054 Cmu11g0338 Cmu-Chr11:3883216 2.60E-17 dispersed
Cmu10g2389 Cmu-Chr10:30304428 Cmu11g0338 Cmu-Chr11:3883216 2.70E-15 dispersed
Cmu11g0338 Cmu-Chr11:3883216 Cmu05g1682 Cmu-Chr5:26887605 6.20E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7115 PF00149 Metallophos 6.00E-10 CL0163 Cmu TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0338 K14491 - csv:101203718 1196.42