Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0349 ATGCATGGTGCCAATTCTTACAATCATGCATCTTTTATTGGAAGCTTGATTTGTAAAGCAAGAGAGGGTGATTTTAATGGGGTAGAGATCTTCAATGGTTATACCCTTTCTTCTATGAAGGATGTGTCCAATTTTGCAGCTCTCAATATTGAGTGTTATGATAAACCCATCTCTCTCCACTCTTCTATCCATAGGGGGTGGAAATGCAAATTATTACACAATTTCCTCAATGCCAATTCAAGTTCTGACATGTCAAACATGGGGAAACTCTTTCAAGAATGGAGACAAGCTGCAGAAGTAGAAGCAAGAAGCTCAAAAAAACAAGTCTTGATTTTGACATCAGCAGTTCAATACAAGCCAGATTTGGAAAATGGGTCATCTTTTCCAGTGGATTCCATAAGGAATAATTTGAATTGGGTAAATATTTTGGCTTATGATTATTACATGCCAAATTGGGCAAATTTTACAGCTCCTTTTGCAGCTTTATATGATCCAAAATTAGGAGCAAATACAGATAGTGGAATTGGGAAATGGATTGAAAAAGGATTACCAGCTGCTAATATTCTTTTGGCTTTACCATTTTATGGATATGCTTGGAGGCTTAAAAATGTTGAGAATTTTGGTGTTGGGGCAGCAGCAATTGGGGCAGCAATTAATAATGATGGGTCAATTAGTTATAAGAATATAAAGGAATTTATGGAGAGAAATGGGGTTGATGAAGTGAAGTTTAATGGAAGTTATGTGATGAGTTATTGTGTGGTTGGATCTACTTGGATTGCTTTTGATGATGCTGAGGTTGTTAAAATTAAGGTTTCTTATGTTAAACAAAGGAGGTTGCTTGGTTACTTTGTTTGGTTGGTGTCTTATGATGACAATTGGGAGCTCTCTTCTGTTGCAGCAAGAGAGTTTGGCAATGAGAAAGAGAAGAAGGTATCATTGCTGATAATCATCCCAAGTACAATTGGTGCAGCCATATTATTACTACTACTAGGATTTTTGTTGTTTAGAAGACTCAAATCCAAAGGAAGAAGATCAAAATTCAATGTAAAAAATCTTGTTGGTGGAGAAGATTTTGGTAGCAATGCACCTGATTTGCAAGTTTTTAGCTTTGATGAGATTGAAAAAGCTACCAATAAGTTTGCTTTCATGAATAAACTTGGACAAGGTGGTTATGGTCCTGTTTATAAGGGTATACTACCAAATGGAAAGGAGATAGCAGTGAAAAGATTGTCAGAAACTTCAGGACAGGGTTTTGAGGAGTTTAAGAATGAAGTTTTGCTCACTGCAAGATTACAACATGTCAATCTTGTGAGAGTTCTTGGATTTTGTGTTGACACTCATCAACATATGTTGGTTTATGAGTACATGCCTAACAAAAGCTTGGACTTCCACCTATTTGGCCTTGGAAGAGGGAATTTGTTGAATTGGGCAAAAAGAGTGGAGATCATTGAAGGGGTAACTCAAGGACTTCTTTACCTACAAGAATACTCAAGATTGACAATCATTCATAGGGATTTGAAGCCTAGCAATATTTTGTTGGATGATGGAATGAAACCGAAAATCTCAGATTTTGGCATGGCTAGAATTTTTGCAAAAGATGAACTTGAAGCAAACACGAGTCGGATTGCGGGAACACATGGTTATATACCTCCTGAGTATGTGAGAAAAGGACTTTATTCTACGAAATCAGATGTATTTAGCTTCGGAGTTCTTCTTCTTCAAATCATAAGTGGCAAGAAGATTACTAAGTTGTATGGAGTGCATGAACATTTGAACCTTCTAGATTATGCATATGAGCTGTGGAAAGATGGCAAAGGAATGGAGTTTATGGATTCATCACTTGATGATTCTGATTCAACTTGCAAACTCACAAGATGCATGCAAATAGCTTTGCTTTGTGTCCAAGAAAATGCAGATGATAGGCCATCCATGTTGGAAATCTCTTCAATGCTTAAAAATACAACTTCAGATATTAAAGCTCCACAAAGACCTGCTTTCTCTACAAAAGAAATTCAACATGAAACTGATGATCATACCCTTACCATTCAACAAGAAACTTACTCAATTTGTACTCCAACAGTTTCCGAATTTGCAGCTCGATGA 2103 36.61 MHGANSYNHASFIGSLICKAREGDFNGVEIFNGYTLSSMKDVSNFAALNIECYDKPISLHSSIHRGWKCKLLHNFLNANSSSDMSNMGKLFQEWRQAAEVEARSSKKQVLILTSAVQYKPDLENGSSFPVDSIRNNLNWVNILAYDYYMPNWANFTAPFAALYDPKLGANTDSGIGKWIEKGLPAANILLALPFYGYAWRLKNVENFGVGAAAIGAAINNDGSISYKNIKEFMERNGVDEVKFNGSYVMSYCVVGSTWIAFDDAEVVKIKVSYVKQRRLLGYFVWLVSYDDNWELSSVAAREFGNEKEKKVSLLIIIPSTIGAAILLLLLGFLLFRRLKSKGRRSKFNVKNLVGGEDFGSNAPDLQVFSFDEIEKATNKFAFMNKLGQGGYGPVYKGILPNGKEIAVKRLSETSGQGFEEFKNEVLLTARLQHVNLVRVLGFCVDTHQHMLVYEYMPNKSLDFHLFGLGRGNLLNWAKRVEIIEGVTQGLLYLQEYSRLTIIHRDLKPSNILLDDGMKPKISDFGMARIFAKDELEANTSRIAGTHGYIPPEYVRKGLYSTKSDVFSFGVLLLQIISGKKITKLYGVHEHLNLLDYAYELWKDGKGMEFMDSSLDDSDSTCKLTRCMQIALLCVQENADDRPSMLEISSMLKNTTSDIKAPQRPAFSTKEIQHETDDHTLTIQQETYSICTPTVSEFAAR 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3966270 3976104 + CmPI595203_11g003490.1 Cmu11g0349 428871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0349 700 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 306 IPR001223 GO:0005975(InterPro)
Cmu11g0349 700 Gene3D Transferase(Phosphotransferase) domain 1 456 676 - -
Cmu11g0349 700 FunFam Uncharacterized protein 456 660 - -
Cmu11g0349 700 CDD STKc_IRAK 386 653 - -
Cmu11g0349 700 SMART 2g34 28 290 IPR011583 GO:0008061(InterPro)
Cmu11g0349 700 FunFam Class V chitinase CHIT5b 194 261 - -
Cmu11g0349 700 Gene3D Glycosidases 7 292 - -
Cmu11g0349 700 SUPERFAMILY Protein kinase-like (PK-like) 363 676 IPR011009 -
Cmu11g0349 700 Pfam Glycosyl hydrolases family 18 5 290 IPR001223 GO:0005975(InterPro)
Cmu11g0349 700 ProSiteProfiles Protein kinase domain profile. 380 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0349 700 SUPERFAMILY Chitinase insertion domain 195 261 IPR029070 -
Cmu11g0349 700 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0349 700 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 345 455 - -
Cmu11g0349 700 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 268 666 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cmu11g0349 700 Gene3D - 194 261 IPR029070 -
Cmu11g0349 700 SMART serkin_6 380 651 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0349 700 Gene3D Phosphorylase Kinase; domain 1 356 455 - -
Cmu11g0349 700 Pfam Protein kinase domain 382 647 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0349 700 SUPERFAMILY (Trans)glycosidases 5 306 IPR017853 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g0349 Cmu-Chr11:3966270 Cmu09g0202 Cmu-Chr9:2101377 8.90E-100 dispersed
Cmu11g0347 Cmu-Chr11:3958492 Cmu11g0349 Cmu-Chr11:3966270 3.90E-43 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75912 PF00704 Glyco_hydro_18 4.70E-38 CL0058 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0349 - - - 0.0