Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu11g0350 | ATGCAACAGAAATGGTGTCATCTGAGGAAGGAGAAAAGAGACTTCAAATCTTTGGCCCTAACAAACTTGAAGAGAAAAGAGAGCAAATTCCTCAAGTTTTTGGGGTTCATGTGGAACCCCCTCTCATGGGTCATGGAATCTGCTGCTATCATGGCTATTGTCTTGGCCAATGGAGGGGGAAAGCCTCCGGACTGGCAAGATTTTGTTGGAATAGTGGTGTTGCTCATTATCAACTCTACCATCAGTTTTATTGAAGAGAACAATGCAGGTAATGCAGCTGCTGCTCTAATGGCAGGACTTGCTCCAAAAACCAAGGTTTTGAGAGATGGAAAATGGAGTGAGGAAGAGGCAGCTATTTTAGTACCAGGAGATTTAATCAGTATCAAGTTGGGAGATATTGTCCCTGCTGATGCAAGACTCTTGGAAGGCGATCCTCTTAAGATCGATCAATCTGCTCTCACCGGCGAATCCTTACCGGTTACCAAGAACCCGGGCGACGAGGTTTTCTCTGGCTCAACTTGTAAACAAGGAGAAATTGAGGCTATTGTTATTGCCACTGGTGTCCACACCTTCTTTGGCAAGGCAGCTCATGTTGTTGATAGCACTAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCCATTGGTAACTTCTGCATTTGCTCCATTGCTCTAGGAATGCTCATTGAAATCATAGTGATGTACCCAATCCAAAATAGGGCATACAGAGAGGGCATTGATAACTTGCTGGTTCTTCTCATCGGTGGCATTCCAATTGCCATGCCGACAGTGTTGTCGGTGACCATGGCTATTGGTTCTCACCGTCTAGCGGAGCAAGGTGCTATTACCAAAAGAATGACATTGAAGAAATGGCAGGAATGGATGTGCTTTGTAGTGACAAAGACTCTCACCCTCAACAAGCTGACAGTGGACAAGAGTTTGATTGAAAATATCGACGCAGACACATTACTTCTGCTGGCTGCAAGAGCTTCAAGAGTTGAGAACCAAGATGCTATCAATGCTTCGATTGTCGGGATGTTGGGTGATCCAAAGGAGCGCACTGCTATCACTTACATTGATAGTAATGGAAACTGGCATAGAAGTAGCAAGGGTGCTCTGGAACAGATAATTGACCTTTGTGACCTCAAAGGGGAGATAAGGAAGAAGGCTCATGATATTATCAGTAATTATGCAGATCGTGATCTTCGTTCTCTAGCCGTCGCTCGTCAGACTGTTCTAGAGAAAACCAAAGAGAGTGCTGGAGAGCCATGGGACTTTGTGGGCTTGTTGCCCCTCTTTGATCCTCCAAGGCATGATAGTGCAGAGACTATTCGTCAAGCACTCGAACTCGGGGTAAATGTTAAGATGATCACTGGAGATCAATTGGCCATTGGAAAAGAGACCGGTCGTAGGCTCGGTATGGGCACCAATATGTATCCATCATCTTCCTTACTTGGTCAAAGCAAGGATGAATCCATTGCTAGCATTCCTGTTGATGAACTTATTGAGAAGGCAGATGGGTTTGCTGGTGTCTTCCCAGAACACAAGTATGAGATAGTGAAAAAGCTCCAAGAGAGGAAACACATTTGTGGGATGACTGGTGACGGTGTTAACGATGCCCCTGCACTCAAGAAGGCCGACATTGGAATTGCTGTAGCTGATGCAACTGATGCAGCAAGGAGTGCATCAGACATTGTTTTAACAGAACCAGGTCTCAGTGTAATCGTGAGTGCAGTTCTAACAACTCTGATATGGAAGTTTGACTTCTCACCTTTCATGGTCTTGATTATTGCCATCTTGAATGATGGAACCATCATGACCATCTCCAAGGATAGAGTGAAGCCATCTCCTATGCCTGATTCATGGAAGCTAAACGAAATTTTCGCCACCGATGTTGTTCTCGGAACGTACATGGCTATCATGACTGTGGTCTTCTTCTGGCTAACATATCAGACTGATTTCTTTCCAAAAACATTTGGGGTGAAGCAAATCAGTGAAAATCTAGCTGAGCTTAACTCTGCTCTTTACCTCCAAGTGAGCATCATTAGCCAAGCCCTCATCTTCGTGACGCGATCAAGGAGTTGGTCCTTTGTAGAGCGCCCTGGTGTTTTGCTAGTTGGAGCCTTCCTAATAGCTCAGCTGTTGGCAACCGTCATCGCCGTGTATTCCAAATGGGACTTTGCTAGAATTCATGGCATTCGTTGGGGATGGGCAGGAACTGCATTCACAACTAAGAAGGATTATGGAAAAGGAGAAAGGGAGGCACAATGGGCATCAGCACAACGTACACTTCACGGCTTACAGAAACCAGAAGCGCTATTTAACGACACGAGTAGCTACCGAGAGCTTTCCGAGATCGCAGAACAAGCAAAGAGAAGAGCTGAAGTTGCCAGGATGAGTCAGAATGTATAA | 2412 | 45.32 | MQQKWCHLRKEKRDFKSLALTNLKRKESKFLKFLGFMWNPLSWVMESAAIMAIVLANGGGKPPDWQDFVGIVVLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWSEEEAAILVPGDLISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHVVDSTNQVGHFQKVLTAIGNFCICSIALGMLIEIIVMYPIQNRAYREGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAEQGAITKRMTLKKWQEWMCFVVTKTLTLNKLTVDKSLIENIDADTLLLLAARASRVENQDAINASIVGMLGDPKERTAITYIDSNGNWHRSSKGALEQIIDLCDLKGEIRKKAHDIISNYADRDLRSLAVARQTVLEKTKESAGEPWDFVGLLPLFDPPRHDSAETIRQALELGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSSLLGQSKDESIASIPVDELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTTLIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLNEIFATDVVLGTYMAIMTVVFFWLTYQTDFFPKTFGVKQISENLAELNSALYLQVSIISQALIFVTRSRSWSFVERPGVLLVGAFLIAQLLATVIAVYSKWDFARIHGIRWGWAGTAFTTKKDYGKGEREAQWASAQRTLHGLQKPEALFNDTSSYRELSEIAEQAKRRAEVARMSQNV | 803 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 3978025 | 3982209 | + | CmPI595203_11g003500.1 | Cmu11g0350 | 428872 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu11g0350 | 803 | FunFam | Plasma membrane ATPase | 102 | 186 | - | - | |
| Cmu11g0350 | 803 | Gene3D | - | 778 | 802 | - | - | |
| Cmu11g0350 | 803 | Gene3D | - | 430 | 570 | IPR023214 | - | |
| Cmu11g0350 | 803 | PRINTS | H+-transporting ATPase (proton pump) signature | 564 | 589 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu11g0350 | 803 | PRINTS | H+-transporting ATPase (proton pump) signature | 533 | 549 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu11g0350 | 803 | PRINTS | H+-transporting ATPase (proton pump) signature | 390 | 408 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu11g0350 | 803 | PRINTS | H+-transporting ATPase (proton pump) signature | 505 | 521 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu11g0350 | 803 | Pfam | E1-E2 ATPase | 101 | 278 | - | - | |
| Cmu11g0350 | 803 | CDD | P-type_ATPase_H | 25 | 739 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cmu11g0350 | 803 | SUPERFAMILY | Calcium ATPase, transduction domain A | 102 | 199 | IPR008250 | - | |
| Cmu11g0350 | 803 | NCBIfam | HAD-IC family P-type ATPase | 71 | 481 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu11g0350 | 803 | NCBIfam | HAD-IC family P-type ATPase | 508 | 579 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cmu11g0350 | 803 | Gene3D | - | 36 | 113 | - | - | |
| Cmu11g0350 | 803 | Gene3D | - | 161 | 288 | - | - | |
| Cmu11g0350 | 803 | Gene3D | - | 579 | 745 | - | - | |
| Cmu11g0350 | 803 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 302 | 439 | IPR023299 | GO:0000166(InterPro) | |
| Cmu11g0350 | 803 | Coils | Coil | 780 | 800 | - | - | |
| Cmu11g0350 | 803 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 24 | 741 | IPR023298 | - | |
| Cmu11g0350 | 803 | FunFam | Plasma membrane ATPase | 425 | 581 | - | - | |
| Cmu11g0350 | 803 | PRINTS | P-type cation-transporting ATPase superfamily signature | 556 | 568 | - | - | |
| Cmu11g0350 | 803 | PRINTS | P-type cation-transporting ATPase superfamily signature | 428 | 439 | - | - | |
| Cmu11g0350 | 803 | PRINTS | P-type cation-transporting ATPase superfamily signature | 533 | 552 | - | - | |
| Cmu11g0350 | 803 | PRINTS | P-type cation-transporting ATPase superfamily signature | 149 | 163 | - | - | |
| Cmu11g0350 | 803 | PRINTS | P-type cation-transporting ATPase superfamily signature | 450 | 460 | - | - | |
| Cmu11g0350 | 803 | PRINTS | P-type cation-transporting ATPase superfamily signature | 296 | 310 | - | - | |
| Cmu11g0350 | 803 | Pfam | haloacid dehalogenase-like hydrolase | 396 | 547 | - | - | |
| Cmu11g0350 | 803 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 25 | 581 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cmu11g0350 | 803 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 22 | 581 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cmu11g0350 | 803 | Gene3D | - | 305 | 429 | IPR023299 | GO:0000166(InterPro) | |
| Cmu11g0350 | 803 | SUPERFAMILY | HAD-like | 426 | 579 | IPR036412 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu11g0350 | Cmu-Chr11:3978025 | Cmu11g1213 | Cmu-Chr11:23652328 | 0.00E+00 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu11g0350 | K01535 | - | csv:101211582 | 1350.88 |