Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0403 ATGAAGATCCGTTGTGATGTTTGCGAGAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGACGAAGCGGCCCTCTGTGCCGCCTGTGACCGCCACGTCCACCGCGCCAACAAGCTCGCCGAGAAACACAACCGTTTCTCTCTCCTCCAATCCACCGCCGCCGCTGCCAATTCACTGCCGTTGTGCGATATCTGCCAGGTCCGGCGAGCGTTTCTGTTCTGTCGCGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATTCCAATTCACATCACCAACGATCGAACCCAGAAGCACACCCGGTTTCTTCTCACCGGCGTGAAGGTCTCGCCGTCGCCGTTGGCTTCTTCTACTTCCTCATCCTCCGTCTCAGGCGGCGGCGAAGAAATTGAAGGCGAAATTGGGTTGTTCAAGAGACGCTCGAGGAAGAGGGCTAAAATGGAGGAATTAGAGAAGCCATTGAATGTTGAAGAAAATGGGGTATCAATAAGCAGTATTTGGGAGTATTTGGAGAGTTTGCCTGGTTGGTGCGTGGAGGAGTTTCTTGATTCTTCATCTACTGCTGATATTTTTCTGTAA 576 51.74 MKIRCDVCEKEEASVFCPSDEAALCAACDRHVHRANKLAEKHNRFSLLQSTAAAANSLPLCDICQVRRAFLFCREDRAILCRECDIPIHITNDRTQKHTRFLLTGVKVSPSPLASSTSSSSVSGGGEEIEGEIGLFKRRSRKRAKMEELEKPLNVEENGVSISSIWEYLESLPGWCVEEFLDSSSTADIFL 191
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4458319 4458894 - CmPI595203_11g004030.1 Cmu11g0403 428925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0403 191 CDD Bbox1_BBX-like 60 103 IPR049808 -
Cmu11g0403 191 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Cmu11g0403 191 CDD Bbox1_BBX-like 5 47 IPR049808 -
Cmu11g0403 191 Gene3D Classic Zinc Finger 1 102 - -
Cmu11g0403 191 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Cmu11g0403 191 SMART bboxneu5 56 103 IPR000315 GO:0008270(InterPro)
Cmu11g0403 191 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270(InterPro)
Cmu11g0403 191 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 184 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Cmu11g0403 191 Pfam B-box zinc finger 58 99 IPR000315 GO:0008270(InterPro)
Cmu11g0403 191 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1349 Cmu-Chr9:19879976 Cmu11g0403 Cmu-Chr11:4458319 7.70E-35 dispersed
Cmu07g1002 Cmu-Chr7:24755248 Cmu11g0403 Cmu-Chr11:4458319 2.40E-30 transposed
Cmu11g0403 Cmu-Chr11:4458319 Cmu02g0501 Cmu-Chr2:4577916 4.10E-47 wgd
Cmu11g0403 Cmu-Chr11:4458319 Cmu08g1398 Cmu-Chr8:26139667 8.20E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7117 PF00643 zf-B_box 1.60E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0403 - - - 0.0