Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0408 ATGGTAAAGTGTTTCTCTCTCATCGTCGCTCTCTCTCTCCTCGCCGTATCGGCGATTGGCGCCGAGGTCTTCTCCGGTGAATCGGACGGAGATTTTGTTATCCGTCAGGTTGTTGACGACGGAGGAGTCAACGGAGGAAGTAACGGCGACGATCTGCTACTCGGAGCCGAGCACCACTTTTCGCTCTTTAAGCGAAAGTTTGGGAAGTCGTACGCTTCCAAGGAGGAGCATGATCACCGGTTCAGGGTATTCAAAGCCAACCTGAGGCGCGCTCAACGCCACCAGGCCCTTGATCCCTCTGCTACTCATGGCGTCACTCAGTTCTCTGATTTGACTCCATCGGAGTTCCGAAGATCGTTTCTAGGGCTTAGAGGTCGTCGTCTTGGACTCCCTGCGGATGCTAACAAGGCCCCCATTCTTCCTACCGATGGTCTTCCAACTGATTTCGATTGGAGAGATCATGGCGCCGTAACGGAAGTCAAGAATCAGGGTTCGTGTGGATCCTGCTGGAGTTTCAGTACAACCGGTGCTCTTGAAGGCGCTAACTTCCTTGCTACCGGAAAACTTGTTAGCCTTAGCGAACAACAGCTTGTAGATTGTGATCACGAGTGTGATCCAGAAGAAAAAGATTCCTGTGATTCTGGCTGCAATGGAGGGCTAATGAATAGTGCATTCGAGTACACATTGAAAGCCGGTGGACTTATGAAAGAGAACGACTACCCATACACTGGTACAGATCGTGGAACCTGCAAATTTGACAAGAGCAAAATTGCTGCATCAGTAGCCAACTTTAGTGTTGTCTCTCTTGATGAAGAACAAATTGCTGCCAATCTCGTGAAGAATGGCCCTCTTGCAATTGCTATCAATGCTGTATTCATGCAAACATATATAGGAGGGGTTTCTTGCCCTTACATTTGCTCAAAGCATTTGGATCATGGAGTTCTATTGGTTGGTTATGGATCTGGTGCCTATGCTCCCATCCGATTGAAAGAGAAACCATACTGGATCATTAAGAACTCCTGGGGAGCCAAATGGGGGGAGAATGGATACTATAAAATCTGCAGGGGCCGGAATATCTGTGGAGTCGACTCCATGGTGTCGACAGTCGCTGCAGTTCATACCGCTGCGAATTAA 1134 48.85 MVKCFSLIVALSLLAVSAIGAEVFSGESDGDFVIRQVVDDGGVNGGSNGDDLLLGAEHHFSLFKRKFGKSYASKEEHDHRFRVFKANLRRAQRHQALDPSATHGVTQFSDLTPSEFRRSFLGLRGRRLGLPADANKAPILPTDGLPTDFDWRDHGAVTEVKNQGSCGSCWSFSTTGALEGANFLATGKLVSLSEQQLVDCDHECDPEEKDSCDSGCNGGLMNSAFEYTLKAGGLMKENDYPYTGTDRGTCKFDKSKIAASVANFSVVSLDEEQIAANLVKNGPLAIAINAVFMQTYIGGVSCPYICSKHLDHGVLLVGYGSGAYAPIRLKEKPYWIIKNSWGAKWGENGYYKICRGRNICGVDSMVSTVAAVHTAAN 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4488269 4490365 - CmPI595203_11g004080.1 Cmu11g0408 428930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0408 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 310 320 IPR025660 -
Cmu11g0408 377 SMART pept_c1 145 370 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu11g0408 377 SUPERFAMILY Cysteine proteinases 58 369 IPR038765 -
Cmu11g0408 377 SMART Inhibitor_I29_2 60 116 IPR013201 -
Cmu11g0408 377 Gene3D Cysteine proteinases 47 370 - -
Cmu11g0408 377 CDD Peptidase_C1A 146 369 IPR039417 -
Cmu11g0408 377 Pfam Papain family cysteine protease 145 368 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu11g0408 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 163 174 IPR000169 -
Cmu11g0408 377 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 334 353 IPR025661 -
Cmu11g0408 377 FunFam Cysteine protease RD19A 32 370 - -
Cmu11g0408 377 Pfam Cathepsin propeptide inhibitor domain (I29) 60 116 IPR013201 -
Cmu11g0408 377 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 65 362 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Cmu11g0408 377 PRINTS Papain cysteine protease (C1) family signature 312 322 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu11g0408 377 PRINTS Papain cysteine protease (C1) family signature 163 178 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Cmu11g0408 377 PRINTS Papain cysteine protease (C1) family signature 334 340 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0408 K01373 - - csv:101204401 687.567
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2178 Cmu-Chr5:31238116 Cmu11g0408 Cmu-Chr11:4488269 8.00E-116 dispersed
Cmu10g2092 Cmu-Chr10:26836990 Cmu11g0408 Cmu-Chr11:4488269 6.30E-18 dispersed
Cmu11g0408 Cmu-Chr11:4488269 Cmu11g1882 Cmu-Chr11:30880737 3.00E-54 dispersed
Cmu11g0408 Cmu-Chr11:4488269 Cmu02g0506 Cmu-Chr2:4642767 7.00E-176 wgd
Cmu11g0408 Cmu-Chr11:4488269 Cmu08g1403 Cmu-Chr8:26187419 5.40E-152 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1030 . . . . . . . . . . . . . . . . . Bhi04g00217 . . . Hepe10g0121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00383 Cam11g0429 Cec11g0423 Cco11g0417 Clacu11g0551 Cmu11g0408 Cre11g0894 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102