Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0442 ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACTACTAACAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGGGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACAACCGATTGTTCATCCTACTTTAATCAACTTGGAAAGGGCTCAACCTCTGTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA 990 42.32 MLKSEMTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTCSLLTEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNQLGKGSTSVTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4854418 4858317 - CmPI595203_11g004420.1 Cmu11g0442 428964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0442 329 CDD bHLH_AtBPE_like 148 234 - -
Cmu11g0442 329 Coils Coil 205 225 - -
Cmu11g0442 329 Gene3D - 155 230 IPR036638 GO:0046983(InterPro)
Cmu11g0442 329 SMART finulus 164 214 IPR011598 GO:0046983(InterPro)
Cmu11g0442 329 MobiDBLite consensus disorder prediction 80 139 - -
Cmu11g0442 329 Pfam Helix-loop-helix DNA-binding domain 162 209 IPR011598 GO:0046983(InterPro)
Cmu11g0442 329 FunFam Basic helix-loop-helix transcription factor 155 227 - -
Cmu11g0442 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 228 IPR036638 GO:0046983(InterPro)
Cmu11g0442 329 MobiDBLite consensus disorder prediction 90 116 - -
Cmu11g0442 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 158 208 IPR011598 GO:0046983(InterPro)
Cmu11g0442 329 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 81 268 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cmu11g0442 329 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g0819 Cmu-Chr9:7926626 Cmu11g0442 Cmu-Chr11:4854418 2.30E-33 dispersed
Cmu10g2465 Cmu-Chr10:31251455 Cmu11g0442 Cmu-Chr11:4854418 2.20E-33 dispersed
Cmu11g0442 Cmu-Chr11:4854418 Cmu11g1657 Cmu-Chr11:28819993 6.20E-11 dispersed
Cmu11g0442 Cmu-Chr11:4854418 Cmu02g0518 Cmu-Chr2:4806900 4.20E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7121 PF00010 HLH 2.60E-06 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0442 - - - 0.0