Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0442 | ATGTTGAAGTCGGAGATGACGCCGTCGGCTCGACTCAAACGGCAGCGACCCCATGGCGACTGCCGGAGCTTGTCTTCCGTCTCGACTCCGGCAAGTCGGGTCAACCATTTTGAGGATCTAGTTGCACCTGGAGGTTGGCCCGAGTTAGCTAAGTACGAGATCTCCTCTACGAAGTTTCGAACCAATCAGACGTGTTCACTACTAACAGAGGCGAACTCCGTGGTGGAGGGAGAGATTGCAAAAAAGAGAAAAGGGAAGAAGAAGGAAATGAAATGGAAAGGGAGAGATGACAATAATAATGTTGAATGGGGGAATGGAAGAGAGAAGAAAATGAAAGGAAAGGTTGAAGAAGATGAAGATGATGAAGATGAATCAAAGATTACGGAGGAAAGAGAGAGATGGAAATGCAATTCAAAAGCTTCAAAAGAAGTTCAAAAATCGGATTATGTTCATGTGAGAGCACGTCGAGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGGAGAGAGAAGATAAGTGAGAGAATGAAGTATTTGCAGAATTTGGTCCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAACAAGTTGAGTTCTTATCTATGAAGGTGGCTGCTCTCAATCACAGAGTTGATTTCATCAATGTAGATGACTTCTTGGCCAAACAGGTGTTTCCGACGTTAACAACCGATTGTTCATCCTACTTTAATCAACTTGGAAAGGGCTCAACCTCTGTAACAGTCCCACAAACTCCATTGATCAATAACAACTTGTCTTCAATTACTCATTTTGAACTGTCTTCAACTTGGGGAGGTGATTTACAAAGGTTTGAAGAAGGAGGGCCTCCATTGTTGTCGCCATCAAGCTTTTTATCGCAGCAATGTTCAGGCATTGAAGATGAAAATGAAACATTATTTTTGGACCACAAACTTGTTCCATTTTAA | 990 | 42.32 | MLKSEMTPSARLKRQRPHGDCRSLSSVSTPASRVNHFEDLVAPGGWPELAKYEISSTKFRTNQTCSLLTEANSVVEGEIAKKRKGKKKEMKWKGRDDNNNVEWGNGREKKMKGKVEEDEDDEDESKITEERERWKCNSKASKEVQKSDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDFLAKQVFPTLTTDCSSYFNQLGKGSTSVTVPQTPLINNNLSSITHFELSSTWGGDLQRFEEGGPPLLSPSSFLSQQCSGIEDENETLFLDHKLVPF | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4854418 | 4858317 | - | CmPI595203_11g004420.1 | Cmu11g0442 | 428964 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0442 | 329 | CDD | bHLH_AtBPE_like | 148 | 234 | - | - | |
Cmu11g0442 | 329 | Coils | Coil | 205 | 225 | - | - | |
Cmu11g0442 | 329 | Gene3D | - | 155 | 230 | IPR036638 | GO:0046983(InterPro) | |
Cmu11g0442 | 329 | SMART | finulus | 164 | 214 | IPR011598 | GO:0046983(InterPro) | |
Cmu11g0442 | 329 | MobiDBLite | consensus disorder prediction | 80 | 139 | - | - | |
Cmu11g0442 | 329 | Pfam | Helix-loop-helix DNA-binding domain | 162 | 209 | IPR011598 | GO:0046983(InterPro) | |
Cmu11g0442 | 329 | FunFam | Basic helix-loop-helix transcription factor | 155 | 227 | - | - | |
Cmu11g0442 | 329 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 156 | 228 | IPR036638 | GO:0046983(InterPro) | |
Cmu11g0442 | 329 | MobiDBLite | consensus disorder prediction | 90 | 116 | - | - | |
Cmu11g0442 | 329 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 158 | 208 | IPR011598 | GO:0046983(InterPro) | |
Cmu11g0442 | 329 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 81 | 268 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cmu11g0442 | 329 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu09g0819 | Cmu-Chr9:7926626 | Cmu11g0442 | Cmu-Chr11:4854418 | 2.30E-33 | dispersed | |
Cmu10g2465 | Cmu-Chr10:31251455 | Cmu11g0442 | Cmu-Chr11:4854418 | 2.20E-33 | dispersed | |
Cmu11g0442 | Cmu-Chr11:4854418 | Cmu11g1657 | Cmu-Chr11:28819993 | 6.20E-11 | dispersed | |
Cmu11g0442 | Cmu-Chr11:4854418 | Cmu02g0518 | Cmu-Chr2:4806900 | 4.20E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7121 | PF00010 | HLH | 2.60E-06 | No_clan | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0442 | - | - | - | 0.0 |