Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0452 ATGGAGAGGCAGAGCATGAATATAGCGAAACAAGAAGGAAGGCAATGGCAGAATAATCGGAGAAGAAGAGTTTCCCAACGCCGCCGCTGTCGTTTTTGGAGCACCGGTCAGAGTTTCTCCGGCACTATTCAGACCACTACTCCTTTGCCGGAAACTCTACTAATGTCTTCTTCATCCGATCCTCCTTCCCCTTCTTCTTCTGATTCTGATCCCTCTAATCCCCCTCCTTCTCCACCTCCTTCCACTGCGCCGCCTCCCGATGCTTCTCCGCCTCCCCCGGATTCCTCCTCCTCCTCTCCTCCTCCGCCGGATTCTTCTCCTCCTCCTCCACCCGATGCTTCTTCTCCACCTCCGCCAGATGCATCCCCGCCGCCGCCTAACGACACCTCCCCGCCTCCTGGTGATTCCTCTTCTTCACCGCCACCGCCGAAGGATTCCAACTCTAATTCTCCTCCGTCGCCGCCGCCTCCTCCACCACCACCACCGCCGCCGCCGCCGCCTCCTCCGCCGCGTGGATCCTCAAGGCATTCTCCTCCGCCTCCGAGATCGATCGACTCAGGATCCTCAGACTCCTCGTCCGGCGGTTCCGCTCCCCAGGCGGTGCCGATCATTGTAGGAGTGGCGGTGGCGGCAGGGTTTTTACTTTTCGCCATGGCCTTGATATTCTTCGCTTGCACCCGAAAGAAAAAGAAGCAAAATAGTAATTCCATGTATTTCGATGAACAGTCCGGTCCGAAAGGTGGGGATCCATATTACAACGGAAGGAATCACAACTGGAACAACCCGAGCGAACATTTCGTGAACATGGCGCCAATCAGCGGCGGAACCCAAGGAGGAGGGTGGCCATCGCCGCCGCCGCCTCCTCCGCCGGGATTATTGAGCAGTGATATGAGCTCGAATTTCTCAGGGCCACATGGGCCACCGTTGCCGCCGCCGCACCCATCGGTGGCTCTGGGGTTCAATAAGAGCACTTTCACGTACGATGAGCTGATGGCGGCAACCTCGGGATTCTCTCCGGCGAATCTGTTGGGGCAAGGAGGATTCGGGTATGTTCATAAAGGACTACTGCCCAACGGCAAGGAAATTGCAGTGAAAAGCCTGAAAACAGGAAGCGGGCAAGGAGATCGAGAATTTGCGGCCGAGGTGGAGATCATCAGCCGCGTTCACCACCGCCATCTGGTGTCCCTTGTCGGGTATTGCATCGCCGGTGACCGGAAGATGTTGGTTTACGAATTTGTCCCTAATAACAACCTCGAATTCCACCTTCACGGCAAGGGGCGGCCACCATTGGACTGGTCGACGAGAACGAAGATCGCATTGGGCTCAGCCAAGGGCCTAGCCTATCTCCACGAAGACTGTCATCCTCGCATTATCCACAGAGATATCAAGACGGCCAATATTCTTATAGACATGAGTTTCGAGGCTAAGGTGGCTGATTTTGGATTGGCGAAGCTCAACCAAGACAATTACACTCATGTATCGACTCGCGTCATGGGCACATTTGGATATTTGGCTCCGGAGTACGCATCAAGTGGGAAGCTAACGGAGAAATCAGATATATTCTCATTTGGAGTAATGCTTTTGGAGCTGATTACCGGAAGACGACCGGTGGACACGGCCGGGGAAATGGAAGACAGCTTAGTGGACTGGTCAAGGCCTCTTTGTGTGAAAGCAATGAGTGATGGAAACTATGATGAGTTGGCTGATTCACGGTTAGAGAAGAACTATGATGTCCAAGAAATGGCTTGCATGGTGGCTTGCGCCGCCGCTTGCATTCGCCATTCGGCTCGGCGCCGTCCCAAAATGAGCCAGGTGGTACGAGCATTGGAAGGCGATGTGTCGCTGGATGACTTGAACGATGGAGTAAAGCCAGGGCAAAGCTCATACTTCGGGTCCGGCACGTCCTCGGAGTACGACGCAAGCTCCTATAGTGCCGACATGAAGAGGTTCCGAAAGGTGGCGTTGGACAGCCGCGAGTACGCAAGCAGCGATTATGGCGGCACTAGCGAGTACGGCCTAAACCCTTCCTCAACAAGCAGCGAAATGAGTCGGAAGCCTAGTCGTTTATCTTCCCCCGATCCACCCCCCTCACATTCTTAA 2100 54.9 MERQSMNIAKQEGRQWQNNRRRRVSQRRRCRFWSTGQSFSGTIQTTTPLPETLLMSSSSDPPSPSSSDSDPSNPPPSPPPSTAPPPDASPPPPDSSSSSPPPPDSSPPPPPDASSPPPPDASPPPPNDTSPPPGDSSSSPPPPKDSNSNSPPSPPPPPPPPPPPPPPPPPRGSSRHSPPPPRSIDSGSSDSSSGGSAPQAVPIIVGVAVAAGFLLFAMALIFFACTRKKKKQNSNSMYFDEQSGPKGGDPYYNGRNHNWNNPSEHFVNMAPISGGTQGGGWPSPPPPPPPGLLSSDMSSNFSGPHGPPLPPPHPSVALGFNKSTFTYDELMAATSGFSPANLLGQGGFGYVHKGLLPNGKEIAVKSLKTGSGQGDREFAAEVEIISRVHHRHLVSLVGYCIAGDRKMLVYEFVPNNNLEFHLHGKGRPPLDWSTRTKIALGSAKGLAYLHEDCHPRIIHRDIKTANILIDMSFEAKVADFGLAKLNQDNYTHVSTRVMGTFGYLAPEYASSGKLTEKSDIFSFGVMLLELITGRRPVDTAGEMEDSLVDWSRPLCVKAMSDGNYDELADSRLEKNYDVQEMACMVACAAACIRHSARRRPKMSQVVRALEGDVSLDDLNDGVKPGQSSYFGSGTSSEYDASSYSADMKRFRKVALDSREYASSDYGGTSEYGLNPSSTSSEMSRKPSRLSSPDPPPSHS 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4976478 4982759 - CmPI595203_11g004520.1 Cmu11g0452 428974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0452 699 Pfam Protein tyrosine and serine/threonine kinase 342 609 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0452 699 MobiDBLite consensus disorder prediction 661 699 - -
Cmu11g0452 699 MobiDBLite consensus disorder prediction 231 310 - -
Cmu11g0452 699 MobiDBLite consensus disorder prediction 625 641 - -
Cmu11g0452 699 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524(InterPro)
Cmu11g0452 699 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 172 653 IPR047117 -
Cmu11g0452 699 SMART serkin_6 337 609 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0452 699 SUPERFAMILY Protein kinase-like (PK-like) 312 609 IPR011009 -
Cmu11g0452 699 MobiDBLite consensus disorder prediction 662 687 - -
Cmu11g0452 699 ProSiteProfiles Protein kinase domain profile. 337 615 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0452 699 FunFam proline-rich receptor-like protein kinase PERK1 315 412 - -
Cmu11g0452 699 Gene3D Phosphorylase Kinase; domain 1 314 412 - -
Cmu11g0452 699 FunFam Proline-rich receptor-like protein kinase PERK1 413 620 - -
Cmu11g0452 699 Gene3D Transferase(Phosphotransferase) domain 1 413 620 - -
Cmu11g0452 699 MobiDBLite consensus disorder prediction 1 198 - -
Cmu11g0452 699 MobiDBLite consensus disorder prediction 67 177 - -
Cmu11g0452 699 MobiDBLite consensus disorder prediction 615 641 - -
Cmu11g0452 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0452 699 MobiDBLite consensus disorder prediction 30 66 - -
Cmu11g0452 699 MobiDBLite consensus disorder prediction 179 198 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0888 Cmu-Chr6:12121910 Cmu11g0452 Cmu-Chr11:4976478 2.90E-158 dispersed
Cmu11g0233 Cmu-Chr11:2800321 Cmu11g0452 Cmu-Chr11:4976478 1.80E-161 dispersed
Cmu11g0452 Cmu-Chr11:4976478 Cmu11g0534 Cmu-Chr11:5829654 7.50E-123 dispersed
Cmu11g0448 Cmu-Chr11:4934151 Cmu11g0452 Cmu-Chr11:4976478 1.10E-36 proximal
Cmu05g2611 Cmu-Chr5:34767071 Cmu11g0452 Cmu-Chr11:4976478 1.30E-54 transposed
Cmu07g0911 Cmu-Chr7:23067305 Cmu11g0452 Cmu-Chr11:4976478 5.60E-170 transposed
Cmu01g0757 Cmu-Chr1:8538660 Cmu11g0452 Cmu-Chr11:4976478 2.30E-52 transposed
Cmu11g0452 Cmu-Chr11:4976478 Cmu05g1986 Cmu-Chr5:29621410 2.90E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75915 PF07714 PK_Tyr_Ser-Thr 4.60E-46 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0452 - - - 0.0