Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0463 ATGGCTAAGAAGGACGATTCTGCAAGGCCTCCACTTCAGCGCCCCACCATTACTCTGCCGCCGCGCCCTTCTATGGAGGCTTTTTTCGCTGGCGGACCCACTGGAGTTAGCCCTGGCCCGATGACTCTTCTCTCCAGTTACTTCGCCGACGGTGCCGTTGACTCGCCTTCCTTCTCCCAGCTTCTCGCCGGAGCTATGGCCTCTCCGATGGCTATGGGGTTTTTCGGAACTGGGTCCACACCCAATTATTACGCCAAGGATGGAACCGCCTCGGAATTGGAATTTGGGATGAAACAATCGAAGCCGCTGAATTTAGTGGTAGCTCGGCCTCCTTTGTTCTCGGTCCCGCCGGGGCTTAGTCCTTCTGGGTTGCTTAATTCGCCTGGGTTTTATCCTCCTCAGAGTCCATTCGGAATGTCGCACCAGCAAGCATTGGCTCAGGTTACCGCTCAAGCGGCATTGGCAAATTCTCATATGCATATGCAACAAGCTGAATATCAACATTCTTCGGTACCAGCTCCTACAGAACCGTTGACACGGGATCCATCATTTTCTCTTGATGAAGCATCTCAACTGGCCATATTACCCTCCACTTCAGACACAAAAAGTCTGATTGCAGAACCGACAGAAGTCTCTCACCCTGACAGAAAATATCAACCTCCTCCTCCTCACGTCTCTGATAAACCTGCAGATGATGGCTATAATTGGCGTAAATATGGACAGAAGTTGGTTAAGGGCAGTGAATATCCCCGAAGCTATTACAAATGCACTCATTTGAATTGCCCTGTAAAAAAGAAGATTGAGCGCTCACCTGATGGTCAAATTACTGAAATTATTTACAAAGGACAGCACAACCACGAACCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCGAGTGGATGTACAAATTCTTTGATGAAGCCTGAATGTGGTTTGCAAAATCAAGCTGGAATTTTGAACAAGTCAAGTGAAAATGTGCAATTAGGGTCTAGTGACAGTGAAGAACGAGCTGATACAGAGATAACAGATGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGACGCAGGGACATCTGGTGTTGCCTTGTCACATAAAACCCTCACAGAACCAAAAATCATTGTTCAAACAAGAAGTGAGGTTGACCTGTTAGATGACGGTTATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCTAACCCTAGGAGCTACTACAAATGCACTAGTGCTGGGTGCAACGTCCGAAAGCATGTTGAGAGATCTTCAACAGACTCGAAAGCTGTTGTTACTACATACGAAGGGAAACATAACCATGATGTTCCTGCAGCTAGAAACAGCAGCCACCACACGGTCAACAATACTGTCCCCCAGATCAAACCACACAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATATGGAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1515 47.0 MAKKDDSARPPLQRPTITLPPRPSMEAFFAGGPTGVSPGPMTLLSSYFADGAVDSPSFSQLLAGAMASPMAMGFFGTGSTPNYYAKDGTASELEFGMKQSKPLNLVVARPPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALANSHMHMQQAEYQHSSVPAPTEPLTRDPSFSLDEASQLAILPSTSDTKSLIAEPTEVSHPDRKYQPPPPHVSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKGQHNHEPPPANKRARDNSEPSGCTNSLMKPECGLQNQAGILNKSSENVQLGSSDSEERADTEITDDRDEDEPNPKRQNIDAGTSGVALSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHDVPAARNSSHHTVNNTVPQIKPHKVVAQKHPLLKEMEYGTNDQRPAVLRLKEEQITV 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5135642 5140202 - CmPI595203_11g004630.1 Cmu11g0463 428985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0463 504 SMART WRKY_cls 230 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 SMART WRKY_cls 390 449 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 SUPERFAMILY WRKY DNA-binding domain 382 450 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 MobiDBLite consensus disorder prediction 195 234 - -
Cmu11g0463 504 MobiDBLite consensus disorder prediction 326 369 - -
Cmu11g0463 504 ProSiteProfiles WRKY domain profile. 225 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 FunFam WRKY transcription factor 33 377 443 - -
Cmu11g0463 504 MobiDBLite consensus disorder prediction 1 32 - -
Cmu11g0463 504 ProSiteProfiles WRKY domain profile. 385 450 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 163 461 IPR044810 GO:0003700(InterPro)
Cmu11g0463 504 FunFam WRKY transcription factor 221 290 - -
Cmu11g0463 504 Gene3D WRKY domain 375 451 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 Gene3D WRKY domain 223 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 MobiDBLite consensus disorder prediction 281 311 - -
Cmu11g0463 504 SUPERFAMILY WRKY DNA-binding domain 227 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 Pfam WRKY DNA -binding domain 231 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cmu11g0463 504 Pfam WRKY DNA -binding domain 391 448 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1298 Cmu-Chr6:24159030 Cmu11g0463 Cmu-Chr11:5135642 2.90E-39 dispersed
Cmu10g1215 Cmu-Chr10:4932714 Cmu11g0463 Cmu-Chr11:5135642 4.40E-68 dispersed
Cmu10g1270 Cmu-Chr10:5592451 Cmu11g0463 Cmu-Chr11:5135642 2.20E-72 dispersed
Cmu10g1929 Cmu-Chr10:24780120 Cmu11g0463 Cmu-Chr11:5135642 5.90E-24 dispersed
Cmu10g2952 Cmu-Chr10:35773692 Cmu11g0463 Cmu-Chr11:5135642 8.20E-65 dispersed
Cmu11g0463 Cmu-Chr11:5135642 Cmu11g0779 Cmu-Chr11:8329010 3.70E-23 dispersed
Cmu11g0463 Cmu-Chr11:5135642 Cmu05g2447 Cmu-Chr5:33516691 4.30E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7122 PF03106 WRKY 3.20E-25 CL0274 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0463 - - - 0.0