Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0502 ATGGGTGCTGTCTGCTGCTGTTTGAGCGTGGAGGATTTTGAAGACTATGTTAATCCTAATAGTTCAGTATATAGGAATTGCACCTGTCTTAGTTGCTTCATTCAGAGTTTCTTAAATGCATACACATTGATTTTTCGAAGAGGAGAAGTGCATTCTGTCTCTTCATCAATTCAAGGGGCAACATCCATGAATTCCACAGCATCGACAGATAACTCTTTATCTGAAATGTACCGCTCACCTCCAAGGCCATTGCCTTATGATGCTGATCCCAGATATATCCGCTTGCAGCGGGATGGATTAATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAAGAGTCAGAACCTTTAAGAAGTGATGTGGATACCGATTCAGATTCTTTGGGCTCAGCAGGCAAATGGAATGGTTCTGCTTGTCTTGAGGAATCTAAAGAAAACCTTGGCAAATCATCTCTAAAGTTCCCTTCAACTAAATCTACCACTGGACTTGGGTATTCTTATACATCCTCCGAAGATGAGGATGTCTGTCCAACGTGTCTTGAAGAATATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCATTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGATGAAACGACTTGA 684 41.67 MGAVCCCLSVEDFEDYVNPNSSVYRNCTCLSCFIQSFLNAYTLIFRRGEVHSVSSSIQGATSMNSTASTDNSLSEMYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSDVDTDSDSLGSAGKWNGSACLEESKENLGKSSLKFPSTKSTTGLGYSYTSSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5453807 5458230 - CmPI595203_11g005020.1 Cmu11g0502 429024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0502 227 SMART ring_2 177 217 IPR001841 -
Cmu11g0502 227 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 224 - -
Cmu11g0502 227 MobiDBLite consensus disorder prediction 56 89 - -
Cmu11g0502 227 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Cmu11g0502 227 Pfam Ring finger domain 176 217 IPR001841 -
Cmu11g0502 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 225 IPR013083 -
Cmu11g0502 227 CDD RING-H2_AIRP1-like 173 221 - -
Cmu11g0502 227 MobiDBLite consensus disorder prediction 103 123 - -
Cmu11g0502 227 MobiDBLite consensus disorder prediction 103 129 - -
Cmu11g0502 227 MobiDBLite consensus disorder prediction 56 76 - -
Cmu11g0502 227 SUPERFAMILY RING/U-box 171 223 - -
Cmu11g0502 227 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 223 - GO:0004842(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g0502 Cmu-Chr11:5453807 Cmu06g0930 Cmu-Chr6:12972436 9.20E-06 dispersed
Cmu11g0502 Cmu-Chr11:5453807 Cmu01g0242 Cmu-Chr1:2427604 8.00E-18 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0502 - - - 0.0