Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0516 ATGAGTGGGGCAGGAAGAAGTGCAAAGGATGATGATGAAGAGAAGAGCAGTATTAGCACTCATTTAATGGGAATGAAGAGAACTGAGGCTATTGTTTCCTGTCTTGTGGCTTCTTTATTGTTTTGGGCTTCTGCAATAAATGGCTTGTTATCTCCCAAAGGTGTTAACTATGAAGTTCAAGCTTTGATGGGTATAAAAGCTTCTCTTCAAGATCCCCATGGTGTGCTTGAGAATTGGGATGGGGATTCTGTTGACCCATGTAGTTGGACTATGGTTACTTGCTCTCCTGAGAGCCTTGTCATTGGCTTAGGGACTCCAAGCCAGAACCTGTCTGGGACTCTTTCTCCAACCATTGGGAATTTGACAAACCTTCAAATTGTGCTGTTGCAGAACAACAATATAACAGGCCCAATTCCCCCAGAGCTTGGGAGGCTCTCAAAGCTCCAAACACTTGACCTATCAAACAATTTCTTCACAGGGGAAATTCCTTCTCCTTTAGGCCATTTGAGAAGCCTACAGTACTTGAGGCTTAACAACAACAGTCTTTCTGGGGTAATTCCAATGTCTTTAGCTAACATGACACAACTTGCCTTTCTTGATGTGTCTTATAATAATATCAGTGGCCCTCTGCCTAGATTTCCCAGCAAAACATTCAACATTGTTGGGAACCCTCTGATTTGTGCAACTGGGTCCGAGGCCGGTTGCCACGGTACAACTCTAATGCCCATGTCCATGAATTTGAACAGTACACAAACTGGTTTACCTGCTGTGAAATTGAAGAGTCATAAAATGGCCCTTACATTTGGCTTGAGCCTAGCTTGCCTATGTCTGATTGTTCTTGTATTTGGACTGTTCATATGGTGGAGAAAACGAAGCAATCAACCTACATTCTTCGATGTAAAAGACCAACAACATGAGGAAATTTCGCTTGGAAATCTGAGAAGGTTCCAATTTAGAGAACTTCAGATAGCAACAAACAATTTCAGCAGCAAGAACATACTAGGAAAGGGAGGTTTTGGAAATGTTTACAAAGGAATTCTTTCAGATGGAACGGTTGTTGCTGTTAAAAGGCTCAAAGATGGCAATGCAAGCAGAGGCGAAATCCAGTTTCAGACTGAAGTTGAGATGATCAGCTTAGCCGTGCACCGTCATCTCCTCAGATTATACGGATTTTGCAACACACCAACTGAAAGGCTTCTTGTTTACCCATATATGTCGAATGGAAGTGTTGCATCACGTCTCAAAGGAAAACCGGTATTAGACTGGGGAACAAGGAAGAGGATTGCTATAGGAGCTGCAAGGGGATTGTTATACCTACATGAACAGTGTGACCCAAAGATAATACATAGAGATGTTAAGGCTGCAAACATATTGCTTGATGACTACTGCGAGGCTGTCGTCGGAGATTTCGGGTTAGCAAAGCTTCTGGATCATCAAGATTCACATGTCACAACTGCTGTGAGAGGCACCGTGGGACATATAGCTCCTGAGTATCTATCCACCGGACAGTCCTCCGAGAAAACGGATGTTTTCGGCTTTGGAATCCTACTCCTTGAACTGATCACAGGGCAGAGAGCCCTTGAGTTTGGCAAAGCAGCTAATCAGAAAGGAGGCATTCTTGACTGGGTGAAGAAGATTCACCTAGAGAAGAAGCTGGAAATGTTAGTGGACAAGGATCTGAAAGCCAACTATGACAGAGTTGAACTAGAGGAGATGGTTCAAGTGGCTTTATTGTGCACACAATACCTACCAGGACATAGACCTAAGATGTCAGAAGTTGTCAGAATGCTTGAAGGAGAAGGGCTTGCTGTGAGATGGGAAGCTTCTCAGAGAGTTGACTCAACAAAGTGCAAACCCCATGATTTCTCTTCCTCAGACAGATACTCTGATCTCACAGATGATTCATCATTGTTGGTTCAAGCCATGGAGCTCTCTGGTCCAAGGTGA 1947 43.66 MSGAGRSAKDDDEEKSSISTHLMGMKRTEAIVSCLVASLLFWASAINGLLSPKGVNYEVQALMGIKASLQDPHGVLENWDGDSVDPCSWTMVTCSPESLVIGLGTPSQNLSGTLSPTIGNLTNLQIVLLQNNNITGPIPPELGRLSKLQTLDLSNNFFTGEIPSPLGHLRSLQYLRLNNNSLSGVIPMSLANMTQLAFLDVSYNNISGPLPRFPSKTFNIVGNPLICATGSEAGCHGTTLMPMSMNLNSTQTGLPAVKLKSHKMALTFGLSLACLCLIVLVFGLFIWWRKRSNQPTFFDVKDQQHEEISLGNLRRFQFRELQIATNNFSSKNILGKGGFGNVYKGILSDGTVVAVKRLKDGNASRGEIQFQTEVEMISLAVHRHLLRLYGFCNTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKAANQKGGILDWVKKIHLEKKLEMLVDKDLKANYDRVELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGEGLAVRWEASQRVDSTKCKPHDFSSSDRYSDLTDDSSLLVQAMELSGPR 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5615607 5620603 - CmPI595203_11g005160.1 Cmu11g0516 429038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0516 648 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 35 648 - -
Cmu11g0516 648 SUPERFAMILY L domain-like 57 327 - -
Cmu11g0516 648 ProSiteProfiles Protein kinase domain profile. 328 583 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0516 648 SUPERFAMILY Protein kinase-like (PK-like) 304 598 IPR011009 -
Cmu11g0516 648 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0516 648 Gene3D Phosphorylase Kinase; domain 1 297 404 - -
Cmu11g0516 648 Pfam Protein tyrosine and serine/threonine kinase 331 597 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0516 648 Pfam Leucine Rich Repeat 123 145 IPR001611 GO:0005515(InterPro)
Cmu11g0516 648 Pfam Leucine rich repeat N-terminal domain 56 95 IPR013210 -
Cmu11g0516 648 FunFam Somatic embryogenesis receptor kinase 1 297 404 - -
Cmu11g0516 648 SMART serkin_6 328 597 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0516 648 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515(InterPro)
Cmu11g0516 648 FunFam Somatic embryogenesis receptor-like kinase 1 405 617 - -
Cmu11g0516 648 ProSitePatterns Protein kinases ATP-binding region signature. 334 356 IPR017441 GO:0005524(InterPro)
Cmu11g0516 648 FunFam Putative LRR receptor-like serine/threonine-protein kinase 55 237 - -
Cmu11g0516 648 Gene3D Transferase(Phosphotransferase) domain 1 405 617 - -
Cmu11g0516 648 Gene3D Ribonuclease Inhibitor 55 237 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2383 Cmu-Chr5:33065048 Cmu11g0516 Cmu-Chr11:5615607 1.30E-230 dispersed
Cmu06g1329 Cmu-Chr6:24445132 Cmu11g0516 Cmu-Chr11:5615607 3.70E-185 dispersed
Cmu08g1721 Cmu-Chr8:28621077 Cmu11g0516 Cmu-Chr11:5615607 6.50E-195 dispersed
Cmu10g1709 Cmu-Chr10:19803611 Cmu11g0516 Cmu-Chr11:5615607 1.00E-131 dispersed
Cmu11g0516 Cmu-Chr11:5615607 Cmu11g0534 Cmu-Chr11:5829654 1.10E-72 dispersed
Cmu11g0516 Cmu-Chr11:5615607 Cmu01g2325 Cmu-Chr1:35427622 4.90E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75919 PF00069 Pkinase 6.20E-44 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0516 - - - 0.0