Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0534 ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCCTCAGTTTCTTCACCTCCTTCTCCTTCTTCTCCGGTGGAGTCTGCAACCTCTCCCTCGTCTCCCACATCTTCTGAGCCTAATCAGACTGGTGAACCTCCTTCATCACTTTCTAGTTCTTCAGCTCCACCTCCTCAGTCACCACCGGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTTCTCCCCCTGCTGGTTCACCACCTTCACCTCCCCAATCTTCGCCCTCGCCGCCATCACCTCCGCCACCTTCAACACCATCCTCCCCACCACCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCCACAACATCACCACCACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTCAAACTTCACCTCCCCCTCCTGATTTATCACCTCCACCGCCACCAGCAGCAGCAGATGGTTCTCCACCTCCTGCATCCAATCCTAGACCTCCATCTTCAACGCCCTCTCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTCCTTCTGATTCTCAAACTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTTCTTCAGTTCCTTCATCGTCTGCTCCTCCTCCAGTTAGTGACCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTACCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAATCAATGGTACCAATGTTACAGCAAATAACTCAACCACTAGCAAGGGGGGTTTCAGCACTGGAGCATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTCTGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATAGCTTCTCCTTTTTCCTCGCAAAACTCAGATTCCCTTTTCCTAAGGCCCCATTCTTCAGCTCCTGTAGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCGGAAGGAGGTGGAGTAGGTAATTCGAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGCACCCTTGCAGATGGAAGAGACGTGGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCCCCAGAGTACGCAACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTCGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCCTTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATCGAAGCAGCCGCTGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTATAGTTACGGTTATTCCGAACGAGATCGCAGTCGAAGTTATAGTCAAAGTCATAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGGAACATCTGA 2334 48.07 MASPSPSISPPENPSDSSVSSPPSPSSPVESATSPSSPTSSEPNQTGEPPSSLSSSSAPPPQSPPAVPDAPPPSPPLSPPPLTASPPATPASPPPSPPAGSPPSPPQSSPSPPSPPPPSTPSSPPPPPPSTSTSPPPPSTTSPPPSSASPPPPERSTTSPPPQTSPPPPDLSPPPPPAAADGSPPPASNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGESPKVSPPSHKASPPPSDSQTPPSDNSPPPRSTVPSPPSSVPSSSAPPPVSDPGSPTNSSGGTPVTPPTSVTPERPIATINGTNVTANNSTTSKGGFSTGASVAVGSVVGVLVLSLVIMALWFVQKRKRRKKNIPYTIASPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVGNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSERDRSRSYSQSHSSWSRESRDQSPSAPMNRSRQWNI 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5829654 5835557 + CmPI595203_11g005340.1 Cmu11g0534 429056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0534 777 Gene3D Phosphorylase Kinase; domain 1 391 495 - -
Cmu11g0534 777 Gene3D Transferase(Phosphotransferase) domain 1 496 708 - -
Cmu11g0534 777 FunFam Proline-rich receptor-like protein kinase PERK8 393 495 - -
Cmu11g0534 777 SUPERFAMILY Protein kinase-like (PK-like) 403 693 IPR011009 -
Cmu11g0534 777 SMART serkin_6 420 676 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0534 777 MobiDBLite consensus disorder prediction 278 313 - -
Cmu11g0534 777 ProSiteProfiles Protein kinase domain profile. 420 681 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g0534 777 MobiDBLite consensus disorder prediction 12 53 - -
Cmu11g0534 777 FunFam proline-rich receptor-like protein kinase PERK8 496 708 - -
Cmu11g0534 777 MobiDBLite consensus disorder prediction 750 777 - -
Cmu11g0534 777 ProSitePatterns Serine/Threonine protein kinases active-site signature. 540 552 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0534 777 MobiDBLite consensus disorder prediction 739 777 - -
Cmu11g0534 777 MobiDBLite consensus disorder prediction 54 277 - -
Cmu11g0534 777 ProSitePatterns Protein kinases ATP-binding region signature. 426 448 IPR017441 GO:0005524(InterPro)
Cmu11g0534 777 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 304 729 IPR047117 -
Cmu11g0534 777 MobiDBLite consensus disorder prediction 1 313 - -
Cmu11g0534 777 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g0534 777 CDD STKc_IRAK 426 696 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2118 Cmu-Chr2:34837239 Cmu11g0534 Cmu-Chr11:5829654 6.90E-66 dispersed
Cmu05g2378 Cmu-Chr5:33008169 Cmu11g0534 Cmu-Chr11:5829654 2.00E-147 dispersed
Cmu06g0314 Cmu-Chr6:3673193 Cmu11g0534 Cmu-Chr11:5829654 2.90E-66 dispersed
Cmu09g2146 Cmu-Chr9:37542689 Cmu11g0534 Cmu-Chr11:5829654 1.80E-78 dispersed
Cmu10g2084 Cmu-Chr10:26795691 Cmu11g0534 Cmu-Chr11:5829654 4.30E-67 dispersed
Cmu10g2988 Cmu-Chr10:36062105 Cmu11g0534 Cmu-Chr11:5829654 1.40E-71 dispersed
Cmu11g0088 Cmu-Chr11:1416993 Cmu11g0534 Cmu-Chr11:5829654 5.20E-73 dispersed
Cmu11g0452 Cmu-Chr11:4976478 Cmu11g0534 Cmu-Chr11:5829654 7.50E-123 dispersed
Cmu11g0516 Cmu-Chr11:5615607 Cmu11g0534 Cmu-Chr11:5829654 1.10E-72 dispersed
Cmu11g0534 Cmu-Chr11:5829654 Cmu11g1861 Cmu-Chr11:30763322 2.80E-78 dispersed
Cmu11g1239 Cmu-Chr11:24260496 Cmu11g0534 Cmu-Chr11:5829654 3.10E-69 dispersed
Cmu11g1308 Cmu-Chr11:25278891 Cmu11g0534 Cmu-Chr11:5829654 7.50E-66 dispersed
Cmu02g0216 Cmu-Chr2:2067748 Cmu11g0534 Cmu-Chr11:5829654 5.80E-65 transposed
Cmu05g2586 Cmu-Chr5:34571610 Cmu11g0534 Cmu-Chr11:5829654 4.70E-140 transposed
Cmu11g1351 Cmu-Chr11:25706600 Cmu11g0534 Cmu-Chr11:5829654 1.20E-42 transposed
Cmu11g0534 Cmu-Chr11:5829654 Cmu04g0671 Cmu-Chr4:20742044 6.30E-57 wgd
Cmu11g0534 Cmu-Chr11:5829654 Cmu07g1601 Cmu-Chr7:31168454 2.50E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75920 PF07714 PK_Tyr_Ser-Thr 1.30E-45 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0534 - - - 0.0