Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0534 | ATGGCTTCACCTTCTCCAAGTATTTCTCCTCCTGAGAATCCATCAGATTCCTCAGTTTCTTCACCTCCTTCTCCTTCTTCTCCGGTGGAGTCTGCAACCTCTCCCTCGTCTCCCACATCTTCTGAGCCTAATCAGACTGGTGAACCTCCTTCATCACTTTCTAGTTCTTCAGCTCCACCTCCTCAGTCACCACCGGCTGTTCCTGATGCTCCTCCTCCTTCTCCTCCATTGTCTCCTCCTCCATTGACAGCATCACCACCTGCAACACCAGCATCCCCACCTCCTTCTCCCCCTGCTGGTTCACCACCTTCACCTCCCCAATCTTCGCCCTCGCCGCCATCACCTCCGCCACCTTCAACACCATCCTCCCCACCACCACCACCACCTTCAACATCAACCTCTCCACCACCACCTTCCACAACATCACCACCACCTTCCTCTGCATCACCACCTCCCCCAGAGAGATCAACTACCTCTCCTCCTCCTCAAACTTCACCTCCCCCTCCTGATTTATCACCTCCACCGCCACCAGCAGCAGCAGATGGTTCTCCACCTCCTGCATCCAATCCTAGACCTCCATCTTCAACGCCCTCTCCCCCTCCCCCTGATACAATTTCACCTTCTCCACCTCCACCAACTAATGTCCCAACACCACCTTCATCAACAGGAGAATCACCTAAAGTATCTCCCCCATCCCACAAGGCTTCTCCTCCTCCTTCTGATTCTCAAACTCCACCTTCAGATAACTCCCCTCCACCAAGATCCACAGTACCATCACCTCCTTCTTCAGTTCCTTCATCGTCTGCTCCTCCTCCAGTTAGTGACCCTGGTTCTCCAACTAATTCATCTGGTGGAACTCCTGTTACCCCTCCAACTTCTGTTACACCAGAACGACCAATTGCAACAATCAATGGTACCAATGTTACAGCAAATAACTCAACCACTAGCAAGGGGGGTTTCAGCACTGGAGCATCTGTGGCAGTTGGCAGTGTGGTTGGTGTTCTAGTGCTGAGTCTTGTTATCATGGCTCTGTGGTTTGTTCAGAAACGGAAGAGAAGAAAGAAGAATATCCCTTACACCATAGCTTCTCCTTTTTCCTCGCAAAACTCAGATTCCCTTTTCCTAAGGCCCCATTCTTCAGCTCCTGTAGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCGGAAGGAGGTGGAGTAGGTAATTCGAGATCGTTTGCTTATGATGACCTACACCAGGCAACAAGTGGGTTTTCATCGAATAATCTTTTGGGGGAAGGTGGATTTGGTTGTGTGTATAAAGGCACCCTTGCAGATGGAAGAGACGTGGCTGTTAAACAACTTAAAGTGGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAAGTTGAGATTATTAGCCGAGTACACCATCGACATTTGGTTTCCCTGGTTGGTTACTGTATCTCTGATTATCAAAGATTGCTTGTCTACGATTATGTTCCAAACAATACCCTTCATTACCATCTACACGGGGAGAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGGATTGCTGCTGGTGCAGCTCGTGGAATTGCTTACCTACATGAAGATTGTCATCCACGCATTATTCACAGGGATATTAAATCGTCTAACATTCTGCTTGATATCAACTTTGAAGCTCAGGTTGCAGATTTTGGGCTTGCTAAATTGGCACTGGATTCACATACTCATGTAACAACTCGTGTTATGGGAACCTTTGGATACATGGCCCCAGAGTACGCAACGAGTGGGAAATTGACAGATAAATCTGATGTTTTCTCTTTCGGGGTTGTACTTTTGGAGTTAATTACTGGTCGCAAGCCTGTGGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCCTTGCTTGCACAAGCCATTGAGGATGAGAATTTTGAAGAACTGGTGGATCCAAGGCTAGACAACAATTATGTAGACAGAGAAATGTTCCGGATGATCGAAGCAGCCGCTGCTTGTGTTCGTCATTCGGCAGTAAAGAGGCCAAGAATGAGTCAGGTGGTGAGAGCTCTAGACTCTTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAGAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGAATGTTTCAGAGAATGGCTTTTGGCAGTCAAGATTATAGTTACGGTTATTCCGAACGAGATCGCAGTCGAAGTTATAGTCAAAGTCATAGTAGCTGGAGTAGAGAATCCAGAGATCAAAGTCCCTCGGCGCCTATGAATCGATCCCGGCAATGGAACATCTGA | 2334 | 48.07 | MASPSPSISPPENPSDSSVSSPPSPSSPVESATSPSSPTSSEPNQTGEPPSSLSSSSAPPPQSPPAVPDAPPPSPPLSPPPLTASPPATPASPPPSPPAGSPPSPPQSSPSPPSPPPPSTPSSPPPPPPSTSTSPPPPSTTSPPPSSASPPPPERSTTSPPPQTSPPPPDLSPPPPPAAADGSPPPASNPRPPSSTPSPPPPDTISPSPPPPTNVPTPPSSTGESPKVSPPSHKASPPPSDSQTPPSDNSPPPRSTVPSPPSSVPSSSAPPPVSDPGSPTNSSGGTPVTPPTSVTPERPIATINGTNVTANNSTTSKGGFSTGASVAVGSVVGVLVLSLVIMALWFVQKRKRRKKNIPYTIASPFSSQNSDSLFLRPHSSAPVVGSRTDSDFKYSSSEGGGVGNSRSFAYDDLHQATSGFSSNNLLGEGGFGCVYKGTLADGRDVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISDYQRLLVYDYVPNNTLHYHLHGENRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILLDINFEAQVADFGLAKLALDSHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKPVDSSQPLGDESLVEWARPLLAQAIEDENFEELVDPRLDNNYVDREMFRMIEAAAACVRHSAVKRPRMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRMFQRMAFGSQDYSYGYSERDRSRSYSQSHSSWSRESRDQSPSAPMNRSRQWNI | 777 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5829654 | 5835557 | + | CmPI595203_11g005340.1 | Cmu11g0534 | 429056 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0534 | 777 | Gene3D | Phosphorylase Kinase; domain 1 | 391 | 495 | - | - | |
Cmu11g0534 | 777 | Gene3D | Transferase(Phosphotransferase) domain 1 | 496 | 708 | - | - | |
Cmu11g0534 | 777 | FunFam | Proline-rich receptor-like protein kinase PERK8 | 393 | 495 | - | - | |
Cmu11g0534 | 777 | SUPERFAMILY | Protein kinase-like (PK-like) | 403 | 693 | IPR011009 | - | |
Cmu11g0534 | 777 | SMART | serkin_6 | 420 | 676 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g0534 | 777 | MobiDBLite | consensus disorder prediction | 278 | 313 | - | - | |
Cmu11g0534 | 777 | ProSiteProfiles | Protein kinase domain profile. | 420 | 681 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g0534 | 777 | MobiDBLite | consensus disorder prediction | 12 | 53 | - | - | |
Cmu11g0534 | 777 | FunFam | proline-rich receptor-like protein kinase PERK8 | 496 | 708 | - | - | |
Cmu11g0534 | 777 | MobiDBLite | consensus disorder prediction | 750 | 777 | - | - | |
Cmu11g0534 | 777 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 540 | 552 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g0534 | 777 | MobiDBLite | consensus disorder prediction | 739 | 777 | - | - | |
Cmu11g0534 | 777 | MobiDBLite | consensus disorder prediction | 54 | 277 | - | - | |
Cmu11g0534 | 777 | ProSitePatterns | Protein kinases ATP-binding region signature. | 426 | 448 | IPR017441 | GO:0005524(InterPro) | |
Cmu11g0534 | 777 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 304 | 729 | IPR047117 | - | |
Cmu11g0534 | 777 | MobiDBLite | consensus disorder prediction | 1 | 313 | - | - | |
Cmu11g0534 | 777 | Pfam | Protein tyrosine and serine/threonine kinase | 423 | 693 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g0534 | 777 | CDD | STKc_IRAK | 426 | 696 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu02g2118 | Cmu-Chr2:34837239 | Cmu11g0534 | Cmu-Chr11:5829654 | 6.90E-66 | dispersed | |
Cmu05g2378 | Cmu-Chr5:33008169 | Cmu11g0534 | Cmu-Chr11:5829654 | 2.00E-147 | dispersed | |
Cmu06g0314 | Cmu-Chr6:3673193 | Cmu11g0534 | Cmu-Chr11:5829654 | 2.90E-66 | dispersed | |
Cmu09g2146 | Cmu-Chr9:37542689 | Cmu11g0534 | Cmu-Chr11:5829654 | 1.80E-78 | dispersed | |
Cmu10g2084 | Cmu-Chr10:26795691 | Cmu11g0534 | Cmu-Chr11:5829654 | 4.30E-67 | dispersed | |
Cmu10g2988 | Cmu-Chr10:36062105 | Cmu11g0534 | Cmu-Chr11:5829654 | 1.40E-71 | dispersed | |
Cmu11g0088 | Cmu-Chr11:1416993 | Cmu11g0534 | Cmu-Chr11:5829654 | 5.20E-73 | dispersed | |
Cmu11g0452 | Cmu-Chr11:4976478 | Cmu11g0534 | Cmu-Chr11:5829654 | 7.50E-123 | dispersed | |
Cmu11g0516 | Cmu-Chr11:5615607 | Cmu11g0534 | Cmu-Chr11:5829654 | 1.10E-72 | dispersed | |
Cmu11g0534 | Cmu-Chr11:5829654 | Cmu11g1861 | Cmu-Chr11:30763322 | 2.80E-78 | dispersed | |
Cmu11g1239 | Cmu-Chr11:24260496 | Cmu11g0534 | Cmu-Chr11:5829654 | 3.10E-69 | dispersed | |
Cmu11g1308 | Cmu-Chr11:25278891 | Cmu11g0534 | Cmu-Chr11:5829654 | 7.50E-66 | dispersed | |
Cmu02g0216 | Cmu-Chr2:2067748 | Cmu11g0534 | Cmu-Chr11:5829654 | 5.80E-65 | transposed | |
Cmu05g2586 | Cmu-Chr5:34571610 | Cmu11g0534 | Cmu-Chr11:5829654 | 4.70E-140 | transposed | |
Cmu11g1351 | Cmu-Chr11:25706600 | Cmu11g0534 | Cmu-Chr11:5829654 | 1.20E-42 | transposed | |
Cmu11g0534 | Cmu-Chr11:5829654 | Cmu04g0671 | Cmu-Chr4:20742044 | 6.30E-57 | wgd | |
Cmu11g0534 | Cmu-Chr11:5829654 | Cmu07g1601 | Cmu-Chr7:31168454 | 2.50E-59 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75920 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-45 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0534 | - | - | - | 0.0 |