Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0574 ATGGCCATCTCACCATTCTCTTCTCTTTCAATCTTCTTCCTTATTTTCCTTCCTGCAATCTCAGCCGATTACGGCCACGCCACCTTCTATGGCGGCGGAGACGCTTCCGGCACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGTCAAGGATATGGGACGAACACGGCGGCGCTAAGTACTGCTCTGTTCAACAATGGGCTGAGCTGTGGCTCTTGTTATGAAATCACTTGCAATAGTGATCCTAAATGGTGTCTTCCTGGAAAAATCATCGTCACTGCCACTAATTTCTGTCCACCAAACTTTGCTCTGTCCAACGACAATGGCGGCTGGTGCAACCCTCCTCTGCAGCACTTCGACTTGGCGGAGCCGGCTTTTCTCCAAATCGCTCAATACCGTGCTGGAATCGTCCCTGTTTCCTTCCAAAGAGTACCATGTATGAAGAAGGGAGGAATCAGATTCACCATTAACGGACATTCATACTTCAACTTGGTTCTGATCACCAACGTGGGCGGCGCCGGCGACGTTCACTCAGTGTCGATCAAAGGTTCGAAAACAGGATGGCAAGCCATGTCCAGAAATTGGGGACAGAATTGGCAGAGCAACAATTACTTGAACGGACAGAGTCTCTCTTTCCAAGTCACCACCAGCGACGGCCGTACCGTCACCAGCTACGACGCCGTTCCGGCCAACTGGCAGTTTGGCCAGACGTTCGAGGGAAGCCAATTCTAA 735 51.02 MAISPFSSLSIFFLIFLPAISADYGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEITCNSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFQRVPCMKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNNYLNGQSLSFQVTTSDGRTVTSYDAVPANWQFGQTFEGSQF 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6332320 6333262 + CmPI595203_11g005740.1 Cmu11g0574 429096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0574 244 Pfam Lytic transglycolase 57 142 IPR009009 -
Cmu11g0574 244 SMART dpbb_1 57 142 IPR007112 -
Cmu11g0574 244 CDD DPBB_EXPA_N 25 147 - -
Cmu11g0574 244 Gene3D - 19 148 IPR036908 -
Cmu11g0574 244 PANTHER EXPANSIN-A15 12 244 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 152 IPR007112 -
Cmu11g0574 244 FunFam Expansin 152 244 - -
Cmu11g0574 244 Gene3D - 151 244 IPR036749 -
Cmu11g0574 244 PRINTS Expansin/Lol pI family signature 21 36 IPR007118 GO:0005576(InterPro)
Cmu11g0574 244 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576(InterPro)
Cmu11g0574 244 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576(InterPro)
Cmu11g0574 244 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576(InterPro)
Cmu11g0574 244 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576(InterPro)
Cmu11g0574 244 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 91 101 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 163 184 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 52 66 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 79 90 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 198 219 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 127 140 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 227 243 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 110 127 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 PRINTS Expansin signature 151 163 IPR002963 GO:0009664(InterPro)
Cmu11g0574 244 Pfam Expansin C-terminal domain 153 230 IPR007117 -
Cmu11g0574 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 241 IPR007117 -
Cmu11g0574 244 SUPERFAMILY Barwin-like endoglucanases 12 170 IPR036908 -
Cmu11g0574 244 FunFam Expansin 19 148 - -
Cmu11g0574 244 SUPERFAMILY PHL pollen allergen 149 241 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2469 Cmu-Chr5:33667992 Cmu11g0574 Cmu-Chr11:6332320 5.60E-112 dispersed
Cmu07g0753 Cmu-Chr7:17998821 Cmu11g0574 Cmu-Chr11:6332320 4.50E-73 dispersed
Cmu08g1355 Cmu-Chr8:25766308 Cmu11g0574 Cmu-Chr11:6332320 3.30E-92 dispersed
Cmu10g1177 Cmu-Chr10:4430330 Cmu11g0574 Cmu-Chr11:6332320 1.80E-69 dispersed
Cmu11g0574 Cmu-Chr11:6332320 Cmu11g0982 Cmu-Chr11:15107540 1.90E-105 dispersed
Cmu11g0574 Cmu-Chr11:6332320 Cmu07g0561 Cmu-Chr7:6844854 6.90E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0574 - - - 0.0