Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0584 ATGTCAAGAGAAAGAGAATTGCAACAGGTCGATGAGACCGGGAAGAAAATAAAGAGGGAAATTGATCAAAGTTTTTATGATCCATTAATGGGAAGAAGACATATTTTAAGTCCAAGTACTGGGACGACATTGAATACAATAACGCCATGTGCAGCTTGTAAGCTTTTAAGAAGAAGATGTGCTCAAGAATGTCCATTTTCTCCATATTTTTCTCCACATGAACCCCAAAAATTTGCTTCGGTTCATAAGGTTTTTGGTGCAAGCAACGTGGCTAAGATGCTAATGGAGGTACCGGAGAGTCAAAGAGCGGACGCAGCAAACAGCCTTGTTTATGAAGCAAATCTAAGGCTAAGAGATCCCGTGTATGGTTGCATGGGAGTCATTTCTGCTCTCCAACACCAACTTCATACTTTACAATCTGACCTCAATTCCATCAGAACTCAGATTTTCAACTTCAAATTTACACAACATAATAATTCACACATTCCTAATTTCATTTCCGCCGCCGCAACCCCGCCTGCAGCCCCGCCGACTCCGCCACATTCTCAGCCGCCTCCCCTCTCTCTTCCGCCCCCTCTTCCTTCCTCCTCTTCCATCTTTTCATCTCCTATTATCACTACTACTACTGCTGCCCCTGAATTAATTAACCCCATCTCAACAACTCAACATATCTCCTACTTTGGTTAA 687 42.94 MSRERELQQVDETGKKIKREIDQSFYDPLMGRRHILSPSTGTTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGVISALQHQLHTLQSDLNSIRTQIFNFKFTQHNNSHIPNFISAAATPPAAPPTPPHSQPPPLSLPPPLPSSSSIFSSPIITTTTAAPELINPISTTQHISYFG 228
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6419537 6422004 + CmPI595203_11g005840.1 Cmu11g0584 429106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0584 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 47 173 - -
Cmu11g0584 228 MobiDBLite consensus disorder prediction 166 193 - -
Cmu11g0584 228 ProSiteProfiles LOB domain profile. 48 149 IPR004883 -
Cmu11g0584 228 Pfam Lateral organ boundaries (LOB) domain 49 145 IPR004883 -
Cmu11g0584 228 Coils Coil 128 148 - -
Cmu11g0584 228 MobiDBLite consensus disorder prediction 170 193 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0881 Cmu-Chr5:8005628 Cmu11g0584 Cmu-Chr11:6419537 2.90E-29 dispersed
Cmu09g1951 Cmu-Chr9:35582584 Cmu11g0584 Cmu-Chr11:6419537 3.20E-13 dispersed
Cmu10g2152 Cmu-Chr10:27552403 Cmu11g0584 Cmu-Chr11:6419537 2.80E-32 dispersed
Cmu11g0584 Cmu-Chr11:6419537 Cmu11g1129 Cmu-Chr11:21248884 7.30E-35 dispersed
Cmu11g0584 Cmu-Chr11:6419537 Cmu07g0544 Cmu-Chr7:6422346 4.10E-54 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7128 PF03195 LOB 1.90E-40 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0584 - - - 0.0