Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0603 ATGACACCAGAGACAATTGAGAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTGAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGTCACAGTGCTCGTTTAAACCTTCCCAACATTAAAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTGCGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCGACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCGCAAAGAGGTCACAGCTTGTGCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACAGTGATGGCACTGCGACACCGATGCCCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGTTTCCTAGTTTGGATCAGTCGCAGAACTTTCCAATGGATGAAATATTCGAGCCGAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGATCTTAGAGAAGCAAGTGAAGGATGAAGATCTTGATGCTGTATATCGTGATTGGAGCAATGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTGAATAATTTACAGAACTTTCAAATGGATGAAATGTTTGATGTGGAAGAGCTCCTAAACCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAAACATCTTAAAGGGCAATGCAGATGGTTATACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCGGGCGGATGTAGACTATGGATTTGATTTTTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTCTAA 1245 46.59 MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGHSARLNLPNIKNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFAKRSQLVPSNIKIEDGEGESRTGDHSDGTATPMPLENEVKHEDCNDRAAVLGTEFPSLDQSQNFPMDEIFEPRTGNQADHMAMPMILEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQMDEMFDVEELLNLISSDSLYDPTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQARADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6597673 6599495 + CmPI595203_11g006030.1 Cmu11g0603 429125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0603 414 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0603 414 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0603 414 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 311 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Cmu11g0603 414 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Cmu11g0603 414 MobiDBLite consensus disorder prediction 150 171 - -
Cmu11g0603 414 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0603 414 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0603 414 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0603 414 Pfam AP2 domain 70 120 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0603 414 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
Cmu11g0603 414 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0603 414 MobiDBLite consensus disorder prediction 188 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1912 Cmu-Chr5:29020041 Cmu11g0603 Cmu-Chr11:6597673 2.50E-30 dispersed
Cmu08g1408 Cmu-Chr8:26237278 Cmu11g0603 Cmu-Chr11:6597673 2.20E-30 dispersed
Cmu10g2453 Cmu-Chr10:31110661 Cmu11g0603 Cmu-Chr11:6597673 2.70E-25 dispersed
Cmu11g0603 Cmu-Chr11:6597673 Cmu11g1539 Cmu-Chr11:27710984 7.50E-22 dispersed
Cmu11g0603 Cmu-Chr11:6597673 Cmu11g0610 Cmu-Chr11:6676294 6.00E-19 proximal
Cmu02g1120 Cmu-Chr2:22849293 Cmu11g0603 Cmu-Chr11:6597673 1.50E-49 transposed
Cmu11g0603 Cmu-Chr11:6597673 Cmu04g0720 Cmu-Chr4:21584998 3.40E-38 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7130 PF00847 AP2 4.10E-15 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0603 K09286 - csv:101215431 636.721