Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0603 | ATGACACCAGAGACAATTGAGAGGAAGAGGAAGTCACGGAGTAGACGAGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTTTTGATTCTTGTAATGATGGAAGCAAGCCAATTCGTAAAGCTCCAGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGTAAGGGAGGACCCTTGAATTCACATTGCAATTACAGAGGTGTGAGACAGAGGACTTGGGGCAAATGGGTTGCAGAGATTCGTGAACCCAATAGGGGGAGTAGGCTTTGGCTTGGTACTTTCCCCACTGCCATTGAAGCTGCTCTCGCCTACGACGAGGCTGCGAGGACGATGTACGGTCACAGTGCTCGTTTAAACCTTCCCAACATTAAAAACAGAGGGCAACTACAAGGGATTCTTCTGGAGGATTACTTGGGCCTGCGTAACTCGGATTCTTCAACTGCTACTTCAACATGTTCTGAATCGACGACCACGACGTCGAACCAATCTGAGGTCTGCGTGCCTGAGGAGTTCGCAAAGAGGTCACAGCTTGTGCCCTCAAACATTAAGATTGAAGATGGAGAAGGTGAATCGAGGACAGGGGATCACAGTGATGGCACTGCGACACCGATGCCCTTAGAGAATGAAGTGAAACATGAGGATTGCAATGATCGGGCAGCTGTATTAGGGACTGAGTTTCCTAGTTTGGATCAGTCGCAGAACTTTCCAATGGATGAAATATTCGAGCCGAGGACCGGGAATCAGGCTGATCATATGGCGATGCCTATGATCTTAGAGAAGCAAGTGAAGGATGAAGATCTTGATGCTGTATATCGTGATTGGAGCAATGACCAAGCAGTCTTACCAGAAGCCGGGATTTCTAGTCTGAATAATTTACAGAACTTTCAAATGGATGAAATGTTTGATGTGGAAGAGCTCCTAAACCTGATAAGTAGTGATTCCTTGTATGATCCAACAACAAACATCTTAAAGGGCAATGCAGATGGTTATACTAACGTAGCGCCTTCACAAGTTAGCAATCTTGGGTCTGAGAAGCCGTCAAGTTGGTCATACCAATTCCAAAATCCCGGAGCGAAGCTGCTCGGAAGTCTCCAACAGACGGAGCAAGCGCGGGCGGATGTAGACTATGGATTTGATTTTTTGAAGCAGGGGAGGGAGGAGGATCTGAATGCCGCAGCAGATGATTGTGTTAGATACCTGAACGAGATGGGTGATTTAGGTTTCTAA | 1245 | 46.59 | MTPETIERKRKSRSRRDRSTVAETLAKWKAYNECFDSCNDGSKPIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGSRLWLGTFPTAIEAALAYDEAARTMYGHSARLNLPNIKNRGQLQGILLEDYLGLRNSDSSTATSTCSESTTTTSNQSEVCVPEEFAKRSQLVPSNIKIEDGEGESRTGDHSDGTATPMPLENEVKHEDCNDRAAVLGTEFPSLDQSQNFPMDEIFEPRTGNQADHMAMPMILEKQVKDEDLDAVYRDWSNDQAVLPEAGISSLNNLQNFQMDEMFDVEELLNLISSDSLYDPTTNILKGNADGYTNVAPSQVSNLGSEKPSSWSYQFQNPGAKLLGSLQQTEQARADVDYGFDFLKQGREEDLNAAADDCVRYLNEMGDLGF | 414 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 6597673 | 6599495 | + | CmPI595203_11g006030.1 | Cmu11g0603 | 429125 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0603 | 414 | CDD | AP2 | 69 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0603 | 414 | ProSiteProfiles | AP2/ERF domain profile. | 70 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0603 | 414 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 7 | 311 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Cmu11g0603 | 414 | FunFam | Ethylene-responsive transcription factor 2 | 69 | 128 | - | - | |
Cmu11g0603 | 414 | MobiDBLite | consensus disorder prediction | 150 | 171 | - | - | |
Cmu11g0603 | 414 | Gene3D | AP2/ERF domain | 70 | 128 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0603 | 414 | PRINTS | Ethylene responsive element binding protein signature | 93 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0603 | 414 | PRINTS | Ethylene responsive element binding protein signature | 71 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0603 | 414 | Pfam | AP2 domain | 70 | 120 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0603 | 414 | SUPERFAMILY | DNA-binding domain | 70 | 127 | IPR016177 | GO:0003677(InterPro) | |
Cmu11g0603 | 414 | SMART | rav1_2 | 70 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cmu11g0603 | 414 | MobiDBLite | consensus disorder prediction | 188 | 212 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g1912 | Cmu-Chr5:29020041 | Cmu11g0603 | Cmu-Chr11:6597673 | 2.50E-30 | dispersed | |
Cmu08g1408 | Cmu-Chr8:26237278 | Cmu11g0603 | Cmu-Chr11:6597673 | 2.20E-30 | dispersed | |
Cmu10g2453 | Cmu-Chr10:31110661 | Cmu11g0603 | Cmu-Chr11:6597673 | 2.70E-25 | dispersed | |
Cmu11g0603 | Cmu-Chr11:6597673 | Cmu11g1539 | Cmu-Chr11:27710984 | 7.50E-22 | dispersed | |
Cmu11g0603 | Cmu-Chr11:6597673 | Cmu11g0610 | Cmu-Chr11:6676294 | 6.00E-19 | proximal | |
Cmu02g1120 | Cmu-Chr2:22849293 | Cmu11g0603 | Cmu-Chr11:6597673 | 1.50E-49 | transposed | |
Cmu11g0603 | Cmu-Chr11:6597673 | Cmu04g0720 | Cmu-Chr4:21584998 | 3.40E-38 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7130 | PF00847 | AP2 | 4.10E-15 | CL0081 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0603 | K09286 | - | csv:101215431 | 636.721 |