Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0609 ATGAGAGGTTGGCATGAGACTCGTTCTTCTTCTTCTTGTGCAGCCTGCAAATTGCTGAAAAGAAGATGCATTCCCACTTGTATATTTGCTCCTTATTTTAGGTCTGATGAGCCAAAGAAATTTGCCAAAGTTCACAAGGTTTTTGGGGCAAGTAATGTGAGTAAAATTCTGACTGAGGTTCCTGAGGAGCAGAGAGAAGACACTGTCAATTCTTTGGCTTATGAAGCTGAGGCCAGGCTGAGGGATCCTGTTTATGGCTGCATTGGCGCCATAGCTTTGTTGCAAACAAAAATGGTGGAGCTTCAACATGATCTTGCCCTTGCCAAAGCTCGTCTTGCTCGTTATGCTAATACTTCTTCTTCTTCTTCTTCTTTAGAAAATTGTGTTGTTAATATGTCTTATGGTGGATTCAGTATCTCTTCAGGCCAGAGCTCTTCTGATATCACCCAATATGGATATTTATGTGACTTCTCTCATTTTCCTTATCCATTTAAAGCTTGA 501 40.92 MRGWHETRSSSSCAACKLLKRRCIPTCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLARYANTSSSSSSLENCVVNMSYGGFSISSGQSSSDITQYGYLCDFSHFPYPFKA 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6658568 6659068 + CmPI595203_11g006090.1 Cmu11g0609 429131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0609 166 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Cmu11g0609 166 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Cmu11g0609 166 Coils Coil 91 118 - -
Cmu11g0609 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2332 Cmu-Chr10:29591422 Cmu11g0609 Cmu-Chr11:6658568 5.00E-23 dispersed
Cmu11g0609 Cmu-Chr11:6658568 Cmu11g1129 Cmu-Chr11:21248884 1.90E-37 dispersed
Cmu11g0609 Cmu-Chr11:6658568 Cmu10g2152 Cmu-Chr10:27552403 5.10E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7131 PF03195 LOB 1.20E-38 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0609 - - - 0.0