Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0623 ATGGTCGCGAGGTCTCTGTGGCGCGCCGGAGCGAAGGTCGCGATGGCAGCCACCGCCATGGGCGGTGGTGCTGCAGCGGCCTCCATAGCCACCTCCGACGACCCCTCTATGACTCTTAAGCTCTGCACCACCGTCCCGCTCCGCCTCGTTCGCCTTTCATACACAGTCGCTACCATCGCCGTCGATTATGAATATTCACTGTGGAGTTTGCCCGAAGGGAGTAGTGAGAGGGAGAAAGTTAAGCATGAAGTTCACCTTAGATCTGCACGTAGAATTCAAGAGTTATGCTTCAAGAATGGAGGAATATATATCAAGCTGGGTCAGCATATTGGTCAGTTGGAGTATTTGGTGCCCCAAGAATATGTCCAGATAATGAGAGAATATATGCTGAACAAATGTCCAGTATCCCCGTACAATCAAGTGTGTGAAGTGGTCAAGAGAGAGCTTGGTGAGACACCAGATAAGATCTTTTCTGAATTTAATCCTGATCCAATAGCTAGTGCTTCCCTTGCACAAGTGCATGTTGCTCGTACCCATGATGGGCAAAAAGTTGCTGTGAAGGTGCAGCATACTCATATGACAGATACTGCAGCTGCAGATCATGCTAGTGTTGCATTAATTGTGAACACCCTATATCGAGTTTTTCCTTCTGTTGATTATAGGTGGTTGGTTGATGAGATCAGTGAAAGTTTGCCAAAGGAACTTGATTTCTTAAACGAGGCCAGGAACAGTGAGAAATGTTTGGATAATTTTCGGAAGTTGTCTCCTCATATTGCGGACTATGTGTATGCTCCAAAGGTGTATTGGAACTTAAGTACCTCGAAGTTATTGACCATGGAGTTCATGGATGGTGCTCAAATAAATGATGTTAAATCCATTCAGAAGCTTGGGGTTCAACCGTCAGAAGTTGCAAAATTAGTTAGTCATGCATTTGCTGAGATGATATATAAGCATGGATTTGTACACTGTGACCCTCATGCTGCGAACTTGCTCGTCCGTCCCTTACCTACTAATAGAAGGAGCATCTTTGGCAAGAGGAAGCCACAGTTAGTACTTTTGGATCATGGGCTGTATAAAGATCTTGACTTCAACATAAGATTTAACTATGCTTCCCTATGGAAGGCCTTAATATTTTCTGATGCTGAAGCAATAAAGGAAAACAGTAAGAAATTGGGTGCTGGGGAAGATCTTTATGCGTTGTTTGCTGGAATTCTTACTATGAAACCTTGGAATCGAGTCATTGACCCAGCAGTTGACCATTTAGTCATTCAAGGAACTGACAATGAGCGTTCAGAATTACAGTCAGTCACTTTAGTAGACTCCTCACCTGGCTATCTGACAGCATTCGGCCTTTCTTTCTTCTCAGATGTATGCTTCAGAGTATTTCCCCCAAATCTCAGAGCTCCTCAGGAAATTACCACGTCCGCCGATTCTCCCTGCTCAGTTCTTATTCTCCGGCGGCGACCACTCAGAAACTCACGAGCAGCGGCGACGACCCACGCAACTAGACGTCGAGCGTTCGTCTTCTCCGGAGATGGCGACGGCCCAGACCACCGCGCAACAAAAGGGCAAAAGCATAATTTTTTACAGCTGCTGACCTCAGCAAAAGAATATACAACCTTAATTTTAGAAACGGGTCCTATTTCATTTGAGCCCAAAATTTTGGGTAAAACAATCAAGTTTCCCGCGCAACAAACCCAAACCCACGCGACGAGCGCGAGCGGCAGGATTTCTCCCTTCCGACAAGTTTCTCCTTCGGAGGACGACGAACCACCTCGCGACGACGGGTTTCCTCTGTCGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTCTTCTATGAATTTGGATGCAAGATTGCACCTCTGGTTGGCGATAGAATGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGATGTATGAAGCAGCTCAATCCTCTATGACAGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAG 2313 45.65 MVARSLWRAGAKVAMAATAMGGGAAAASIATSDDPSMTLKLCTTVPLRLVRLSYTVATIAVDYEYSLWSLPEGSSEREKVKHEVHLRSARRIQELCFKNGGIYIKLGQHIGQLEYLVPQEYVQIMREYMLNKCPVSPYNQVCEVVKRELGETPDKIFSEFNPDPIASASLAQVHVARTHDGQKVAVKVQHTHMTDTAAADHASVALIVNTLYRVFPSVDYRWLVDEISESLPKELDFLNEARNSEKCLDNFRKLSPHIADYVYAPKVYWNLSTSKLLTMEFMDGAQINDVKSIQKLGVQPSEVAKLVSHAFAEMIYKHGFVHCDPHAANLLVRPLPTNRRSIFGKRKPQLVLLDHGLYKDLDFNIRFNYASLWKALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVIDPAVDHLVIQGTDNERSELQSVTLVDSSPGYLTAFGLSFFSDVCFRVFPPNLRAPQEITTSADSPCSVLILRRRPLRNSRAAATTHATRRRAFVFSGDGDGPDHRATKGQKHNFLQLLTSAKEYTTLILETGPISFEPKILGKTIKFPAQQTQTHATSASGRISPFRQVSPSEDDEPPRDDGFPLSLVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRKRKSSE 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6803129 6817039 - CmPI595203_11g006230.1 Cmu11g0623 429145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0623 770 Gene3D - 599 752 IPR038437 -
Cmu11g0623 770 MobiDBLite consensus disorder prediction 565 594 - -
Cmu11g0623 770 Pfam ABC1 atypical kinase-like domain 130 387 IPR004147 -
Cmu11g0623 770 SUPERFAMILY GINS helical bundle-like 650 751 IPR036224 -
Cmu11g0623 770 PANTHER ABC1 FAMILY PROTEIN 47 443 IPR051130 GO:0005743(PANTHER)|GO:0007005(PANTHER)|GO:0032592(PANTHER)|GO:0055088(PANTHER)
Cmu11g0623 770 SUPERFAMILY Protein kinase-like (PK-like) 134 333 IPR011009 -
Cmu11g0623 770 CDD ADCK1-like 129 392 IPR045307 -
Cmu11g0623 770 Pfam GINS complex protein helical bundle domain 651 749 IPR021151 -
Cmu11g0623 770 CDD GINS_A_psf3 650 752 - -
Cmu11g0623 770 MobiDBLite consensus disorder prediction 565 581 - -
Cmu11g0623 770 CDD GINS_B_Psf3 601 651 - -
Cmu11g0623 770 SUPERFAMILY PriA/YqbF domain 601 651 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0623 K08869 - - csv:101216868 796.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1288 Cmu-Chr5:14415091 Cmu11g0623 Cmu-Chr11:6803129 2.80E-61 dispersed
Cmu09g1029 Cmu-Chr9:10360561 Cmu11g0623 Cmu-Chr11:6803129 3.60E-25 dispersed
Cmu11g0034 Cmu-Chr11:819265 Cmu11g0623 Cmu-Chr11:6803129 1.50E-18 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g37 . . . . . . . Bma08g01084 . . . . . . . . . Bhi04g02309 . . . Hepe02g3318 . Lcy10g2195 . . . . . . . . Cone5ag0205 Cone11ag1191 . Lsi03g00308 Csa06g00182 . . . . . Bda15g00319 Bpe04g01742 . . . . Cmo04g03029 . . . Car04g02793 . . Cpe01g02515 . . . . . . . Cla11g00592 Cam11g0646 Cec11g0643 Cco11g0628 Clacu11g0765 Cmu11g0623 Cre11g1100 . . Chy03g00185 Cme03g00249
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu08g0021 . 106 689 Core DNA Replication Machinery Family AT4G14700 65.5 5.8e-220 761.1
Cmu08g0021 . 106 689 Core DNA Replication Machinery Family AT4G12620 67.8 2.0e-228 789.3
Cmu08g1512 . 55 408 Core DNA Replication Machinery Family AT2G37560 65.0 3.4e-137 485.0
Cmu07g0520 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.8 3.6e-152 535.0
Cmu06g0359 . 2 453 Core DNA Replication Machinery Family AT4G29910 60.4 1.2e-152 537.0
Cmu11g0788 . 1 254 Core DNA Replication Machinery Family AT1G26840 68.9 2.8e-92 335.5
Cmu09g2159 . 68 861 Core DNA Replication Machinery Family AT1G79150 59.4 4.9e-246 847.8
Cmu10g2068 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.6 0.0e+00 1354.0
Cmu01g2390 . 120 694 Core DNA Replication Machinery Family AT5G46280 80.9 1.4e-268 922.2
Cmu02g0504 . 1 845 Core DNA Replication Machinery Family AT2G16440 76.2 0.0e+00 1153.7
Cmu11g0351 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1112.4
Cmu01g2539 . 7 801 Core DNA Replication Machinery Family AT5G44635 73.3 0.0e+00 1152.9
Cmu09g0496 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1219.9
Cmu02g1962 . 55 521 Core DNA Replication Machinery Family AT2G29680 61.9 5.4e-163 571.2
Cmu02g1962 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 2.6e-143 505.8
Cmu09g0850 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-257 885.9
Cmu10g2776 . 12 783 Core DNA Replication Machinery Family AT3G09660 72.6 0.0e+00 1081.2
Cmu09g1547 . 9 629 Core DNA Replication Machinery Family AT2G14050 79.0 8.3e-286 979.5
Cmu02g1192 . 1908 2312 Core DNA Replication Machinery Family AT2G20980 56.5 1.3e-116 416.8
Cmu09g0256 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cmu11g0623 . 602 769 Core DNA Replication Machinery Family AT1G19080 68.5 1.4e-63 239.6
Cmu11g0623 . 602 769 Core DNA Replication Machinery Family AT3G55490 68.5 1.4e-63 239.6
Cmu05g0160 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.5e-49 193.0
Cmu02g1237 . 1 1538 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1750.3
Cmu04g1203 . 151 768 Core DNA Replication Machinery Family AT1G67630 60.1 2.5e-207 718.8
Cmu06g0203 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.3 1.1e-181 633.3
Cmu08g0150 . 26 452 Core DNA Replication Machinery Family AT5G41880 62.8 1.3e-165 579.7
Cmu01g1468 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.3
Cmu10g2486 . 1 419 Core DNA Replication Machinery Family AT2G42120 75.9 3.2e-196 681.4
Cmu06g0203 . 1 446 Core DNA Replication Machinery Family AT1G67320 64.3 1.1e-181 633.3
Cmu01g0526 . 1 127 Core DNA Replication Machinery Family AT1G09815 60.8 3.3e-37 151.4
Cmu02g2187 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.5 0.0e+00 2981.8
Cmu09g1964 . 85 1107 Core DNA Replication Machinery Family AT1G08260 76.7 0.0e+00 1671.0
Cmu02g2187 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.1 0.0e+00 2948.3
Cmu09g1964 . 107 1107 Core DNA Replication Machinery Family AT2G27120 74.7 0.0e+00 1599.3
Cmu04g1310 . 1 258 Core DNA Replication Machinery Family AT5G22110 77.5 2.9e-121 432.6
Cmu04g1309 . 638 804 Core DNA Replication Machinery Family AT5G22110 60.5 1.2e-47 188.0
Cmu02g2237 . 50 974 Core DNA Replication Machinery Family AT5G22010 63.0 1.1e-304 1042.7
Cmu10g1183 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.0 3.8e-173 604.4
Cmu04g0515 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.3 1.1e-178 622.9
Cmu11g1591 . 119 437 Core DNA Replication Machinery Family AT1G21690 81.6 2.1e-144 508.8
Cmu08g0537 . 1 363 Core DNA Replication Machinery Family AT1G77470 75.5 2.5e-154 542.0
Cmu11g0152 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.9 6.8e-245 843.6
Cmu10g0955 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.4 1.0e-195 680.2
Cmu06g1609 . 1 623 Core DNA Replication Machinery Family AT5G08020 68.3 9.9e-249 856.3
Cmu10g0955 . 10 811 Core DNA Replication Machinery Family AT5G45400 50.3 1.8e-227 786.2
Cmu06g1609 . 1 618 Core DNA Replication Machinery Family AT5G61000 66.1 7.9e-241 830.1
Cmu10g0955 . 5 797 Core DNA Replication Machinery Family AT4G19130 53.7 2.9e-224 775.4
Cmu03g2373 . 1 401 Core DNA Replication Machinery Family AT5G26680 82.8 2.3e-188 655.2
Cmu05g0297 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.3 1.2e-297 1019.6
Cmu07g1546 . 1 297 Core DNA Replication Machinery Family AT2G25100 67.0 1.3e-115 412.9
Cmu02g2147 . 2 740 Core DNA Replication Machinery Family AT1G08130 69.4 8.3e-288 986.5
Cmu02g2147 . 162 740 Core DNA Replication Machinery Family AT1G49250 69.3 2.9e-233 805.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010972 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31