Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0623 ATGGTCGCGAGGTCTCTGTGGCGCGCCGGAGCGAAGGTCGCGATGGCAGCCACCGCCATGGGCGGTGGTGCTGCAGCGGCCTCCATAGCCACCTCCGACGACCCCTCTATGACTCTTAAGCTCTGCACCACCGTCCCGCTCCGCCTCGTTCGCCTTTCATACACAGTCGCTACCATCGCCGTCGATTATGAATATTCACTGTGGAGTTTGCCCGAAGGGAGTAGTGAGAGGGAGAAAGTTAAGCATGAAGTTCACCTTAGATCTGCACGTAGAATTCAAGAGTTATGCTTCAAGAATGGAGGAATATATATCAAGCTGGGTCAGCATATTGGTCAGTTGGAGTATTTGGTGCCCCAAGAATATGTCCAGATAATGAGAGAATATATGCTGAACAAATGTCCAGTATCCCCGTACAATCAAGTGTGTGAAGTGGTCAAGAGAGAGCTTGGTGAGACACCAGATAAGATCTTTTCTGAATTTAATCCTGATCCAATAGCTAGTGCTTCCCTTGCACAAGTGCATGTTGCTCGTACCCATGATGGGCAAAAAGTTGCTGTGAAGGTGCAGCATACTCATATGACAGATACTGCAGCTGCAGATCATGCTAGTGTTGCATTAATTGTGAACACCCTATATCGAGTTTTTCCTTCTGTTGATTATAGGTGGTTGGTTGATGAGATCAGTGAAAGTTTGCCAAAGGAACTTGATTTCTTAAACGAGGCCAGGAACAGTGAGAAATGTTTGGATAATTTTCGGAAGTTGTCTCCTCATATTGCGGACTATGTGTATGCTCCAAAGGTGTATTGGAACTTAAGTACCTCGAAGTTATTGACCATGGAGTTCATGGATGGTGCTCAAATAAATGATGTTAAATCCATTCAGAAGCTTGGGGTTCAACCGTCAGAAGTTGCAAAATTAGTTAGTCATGCATTTGCTGAGATGATATATAAGCATGGATTTGTACACTGTGACCCTCATGCTGCGAACTTGCTCGTCCGTCCCTTACCTACTAATAGAAGGAGCATCTTTGGCAAGAGGAAGCCACAGTTAGTACTTTTGGATCATGGGCTGTATAAAGATCTTGACTTCAACATAAGATTTAACTATGCTTCCCTATGGAAGGCCTTAATATTTTCTGATGCTGAAGCAATAAAGGAAAACAGTAAGAAATTGGGTGCTGGGGAAGATCTTTATGCGTTGTTTGCTGGAATTCTTACTATGAAACCTTGGAATCGAGTCATTGACCCAGCAGTTGACCATTTAGTCATTCAAGGAACTGACAATGAGCGTTCAGAATTACAGTCAGTCACTTTAGTAGACTCCTCACCTGGCTATCTGACAGCATTCGGCCTTTCTTTCTTCTCAGATGTATGCTTCAGAGTATTTCCCCCAAATCTCAGAGCTCCTCAGGAAATTACCACGTCCGCCGATTCTCCCTGCTCAGTTCTTATTCTCCGGCGGCGACCACTCAGAAACTCACGAGCAGCGGCGACGACCCACGCAACTAGACGTCGAGCGTTCGTCTTCTCCGGAGATGGCGACGGCCCAGACCACCGCGCAACAAAAGGGCAAAAGCATAATTTTTTACAGCTGCTGACCTCAGCAAAAGAATATACAACCTTAATTTTAGAAACGGGTCCTATTTCATTTGAGCCCAAAATTTTGGGTAAAACAATCAAGTTTCCCGCGCAACAAACCCAAACCCACGCGACGAGCGCGAGCGGCAGGATTTCTCCCTTCCGACAAGTTTCTCCTTCGGAGGACGACGAACCACCTCGCGACGACGGGTTTCCTCTGTCGCTTGTCTCAGTTGTGTTCCAAAAGGCAGTTAATGGAGTTGGAATCGATCCCAGTTCTGAAACAGATTCTGTTGAATCTGGATCCAAAGTAGAGCTACCCTTCTGGCTTGCACAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTACCTTCCTGTTTTAACCAAAGAACACGGCTGGAAATTCAGGCTGATGCTGCATTTGTTGATCTACGATCTAGATGCCCATTCTTCTATGAATTTGGATGCAAGATTGCACCTCTGGTTGGCGATAGAATGATTGGTTCTTGGCTTTTATCGACGTTCAAGAGTAGGTACAAGGAAGTTCTTACCAAGGCTCACACTGCAGTATTTGCTGCAAGTTCTAAATATTTGGCACTTCTGTCAAAAGAAGAAACCAAGATGTATGAAGCAGCTCAATCCTCTATGACAGCCTTCAAAAAATGGCGAATGGGTGGGCCTAGATTCCAGAAAGCATCCTTTCTAAGCAGGAAGAGGAAGTCATCTGAGTAG 2313 45.65 MVARSLWRAGAKVAMAATAMGGGAAAASIATSDDPSMTLKLCTTVPLRLVRLSYTVATIAVDYEYSLWSLPEGSSEREKVKHEVHLRSARRIQELCFKNGGIYIKLGQHIGQLEYLVPQEYVQIMREYMLNKCPVSPYNQVCEVVKRELGETPDKIFSEFNPDPIASASLAQVHVARTHDGQKVAVKVQHTHMTDTAAADHASVALIVNTLYRVFPSVDYRWLVDEISESLPKELDFLNEARNSEKCLDNFRKLSPHIADYVYAPKVYWNLSTSKLLTMEFMDGAQINDVKSIQKLGVQPSEVAKLVSHAFAEMIYKHGFVHCDPHAANLLVRPLPTNRRSIFGKRKPQLVLLDHGLYKDLDFNIRFNYASLWKALIFSDAEAIKENSKKLGAGEDLYALFAGILTMKPWNRVIDPAVDHLVIQGTDNERSELQSVTLVDSSPGYLTAFGLSFFSDVCFRVFPPNLRAPQEITTSADSPCSVLILRRRPLRNSRAAATTHATRRRAFVFSGDGDGPDHRATKGQKHNFLQLLTSAKEYTTLILETGPISFEPKILGKTIKFPAQQTQTHATSASGRISPFRQVSPSEDDEPPRDDGFPLSLVSVVFQKAVNGVGIDPSSETDSVESGSKVELPFWLAQELHLRQVAVMGLPSCFNQRTRLEIQADAAFVDLRSRCPFFYEFGCKIAPLVGDRMIGSWLLSTFKSRYKEVLTKAHTAVFAASSKYLALLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLSRKRKSSE 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6803129 6817039 - CmPI595203_11g006230.1 Cmu11g0623 429145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0623 770 Gene3D - 599 752 IPR038437 -
Cmu11g0623 770 MobiDBLite consensus disorder prediction 565 594 - -
Cmu11g0623 770 Pfam ABC1 atypical kinase-like domain 130 387 IPR004147 -
Cmu11g0623 770 SUPERFAMILY GINS helical bundle-like 650 751 IPR036224 -
Cmu11g0623 770 PANTHER ABC1 FAMILY PROTEIN 47 443 IPR051130 GO:0005743(PANTHER)|GO:0007005(PANTHER)|GO:0032592(PANTHER)|GO:0055088(PANTHER)
Cmu11g0623 770 SUPERFAMILY Protein kinase-like (PK-like) 134 333 IPR011009 -
Cmu11g0623 770 CDD ADCK1-like 129 392 IPR045307 -
Cmu11g0623 770 Pfam GINS complex protein helical bundle domain 651 749 IPR021151 -
Cmu11g0623 770 CDD GINS_A_psf3 650 752 - -
Cmu11g0623 770 MobiDBLite consensus disorder prediction 565 581 - -
Cmu11g0623 770 CDD GINS_B_Psf3 601 651 - -
Cmu11g0623 770 SUPERFAMILY PriA/YqbF domain 601 651 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g1288 Cmu-Chr5:14415091 Cmu11g0623 Cmu-Chr11:6803129 2.80E-61 dispersed
Cmu09g1029 Cmu-Chr9:10360561 Cmu11g0623 Cmu-Chr11:6803129 3.60E-25 dispersed
Cmu11g0034 Cmu-Chr11:819265 Cmu11g0623 Cmu-Chr11:6803129 1.50E-18 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0623 K08869 - csv:101216868 796.964