Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0649 ATGACGACGATCCAAAACTCCCACGTTGTCGCAATGGATGTAGAACGACAACAAGAACAAGAACGGCCTTGCCCACTTTCCGCCGCTCCCACTGACTCCTCACCGGCCTCCGATGATGTGCGGCGGTGCTCGGCCCAGTCCAGGGCTGACATTCTGGAGGAGGCGGTGGCGGAGAAAAGAAGGAGATCCTCTGTCTCGGATTGCTCTGTCGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCGAAAATCGAGAGGGATTGCCGGATTTGTCATCTGAGTTTGGATGCTTCTAATCACGAATCTGGAATCCCCATTGAGTTGGGTTGTTCTTGTAAGGATGATTTGGCTGCTGCTCATAAGCAGTGTGCCGAGGCTTGGTTCAAGATAAAGGGCGACATCACATGTGAGATCTGTGGATCAATTGCACACAATGTTACTGGTACTTACGAAGCCGATTTGACAGAGCAGCGCAATGAGTCAAACGAAGCAACAACAGCAACCGCTACAGCTGCTGTCGTGATGCCACTGCACTCTACAGAGGTTCGGAACTTCTGGCAGGGCCACAGGTTTATATTATATGATTGGGCTTTGTATTGTTTTAAAGAAAACAGACAGGTTGATGTTCGAAAAGATGCTGAAACGGCTCAGCCTAGCTGGATTGGCCATCTTGTCTCTTGTCGTCTCATTGTGGATAATTCTCTGTTGAGATTCCGACATGTAGTTCCTTCTATACCAACAAAATCGGATTTGGGTCTCAAAATAATTAATGTTAAAAACTGA 795 47.67 MTTIQNSHVVAMDVERQQEQERPCPLSAAPTDSSPASDDVRRCSAQSRADILEEAVAEKRRRSSVSDCSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAHKQCAEAWFKIKGDITCEICGSIAHNVTGTYEADLTEQRNESNEATTATATAAVVMPLHSTEVRNFWQGHRFILYDWALYCFKENRQVDVRKDAETAQPSWIGHLVSCRLIVDNSLLRFRHVVPSIPTKSDLGLKIINVKN 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7165268 7168356 + CmPI595203_11g006490.1 Cmu11g0649 429171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0649 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Cmu11g0649 264 PANTHER ZINC FINGER, RING-CH-TYPE 17 197 - -
Cmu11g0649 264 SUPERFAMILY RING/U-box 89 146 - -
Cmu11g0649 264 ProSiteProfiles Zinc finger RING-CH-type profile. 84 150 IPR011016 GO:0008270(InterPro)
Cmu11g0649 264 SMART ringv_2 91 144 IPR011016 GO:0008270(InterPro)
Cmu11g0649 264 Pfam RING-variant domain 92 143 IPR011016 GO:0008270(InterPro)
Cmu11g0649 264 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g2326 Cmu-Chr1:35436425 Cmu11g0649 Cmu-Chr11:7165268 2.50E-17 dispersed
Cmu11g0649 Cmu-Chr11:7165268 Cmu11g1665 Cmu-Chr11:28913428 2.10E-09 dispersed
Cmu04g0277 Cmu-Chr4:7370573 Cmu11g0649 Cmu-Chr11:7165268 6.10E-09 transposed
Cmu10g2878 Cmu-Chr10:35171135 Cmu11g0649 Cmu-Chr11:7165268 2.40E-30 wgd
Cmu11g0649 Cmu-Chr11:7165268 Cmu03g0723 Cmu-Chr3:1473959 2.40E-29 wgd
Cmu11g0649 Cmu-Chr11:7165268 Cmu04g0782 Cmu-Chr4:22392575 4.30E-31 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0649 - - - 0.0