Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0682 ATGAGTTTTGTTTTCCGTGGAACGAGAGTTCCAGACATTGAAAATGGTCTATCTGGATTTATACCCGAACGACGTGCAATGCGGGTTCATGCAGCACGTCCTGTTAACTCAAACTCACTTGCCTTTCTTGTCACAGTCCTTTTGTTATTCATGATATTAAATTCTCACCAGATGTCACCGAACTTTCTGCTCTGGCTTGTGCTTGGTGTCTTTTTGATGGCTACAACATTAAGGATGTACGCAACTTGTCAACAACTTCAGGCTCAAGCCCAAGCTAGAGCTATGGCAGCCAGTGGCCTTCTCGGTCACACTGAATTGAGGTTACATATGCCACCATCAATAGCACTTGCAACTAGAGGGCGTTTACAGGGGCTAAGGCTTCAACTTGCTCTGCTAGATCGAGAATTCGATGATCTAGATTATGAAACTTTGAGAGCTTTGGATTCTGACAATGCTCCGACAACACCTTCTATGAGTGAGGAACAAATCAATGCTCTTCCCGTTCATAAATACAAGGTTTCTGGTCCTCAAAGCGACCCCTCTGTAAATCAGCAGGCTTCATCTTCAGAATCTAACGAGAAGAGACAAGATTCAGTTAATGCAGTTGGGGGTACCAAGACCTCTGAGGATGAACTCACATGCAGTGTTTGCTTGGAGCAAGTAAATGTTGGTGAACTCATACGTAGTTTGCCATGTTTACATCAGTTCCATGCCAACTGCATAGATCCATGGCTGCGACAGCAGGGAACGTGCCCTGTTTGTAAATTCCGAGCGGTGTCTGGGTGGTCAGAGCAGGGGCAAGGAGAAACTGATGCTTATATGGTTTAA 828 45.05 MSFVFRGTRVPDIENGLSGFIPERRAMRVHAARPVNSNSLAFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATTLRMYATCQQLQAQAQARAMAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNAPTTPSMSEEQINALPVHKYKVSGPQSDPSVNQQASSSESNEKRQDSVNAVGGTKTSEDELTCSVCLEQVNVGELIRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAVSGWSEQGQGETDAYMV 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7512760 7515487 + CmPI595203_11g006820.1 Cmu11g0682 429204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0682 275 ProSiteProfiles Zinc finger RING-type profile. 214 255 IPR001841 -
Cmu11g0682 275 SUPERFAMILY RING/U-box 208 262 - -
Cmu11g0682 275 CDD RING-H2_PA-TM-RING 213 255 - -
Cmu11g0682 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 260 IPR013083 -
Cmu11g0682 275 MobiDBLite consensus disorder prediction 171 205 - -
Cmu11g0682 275 Pfam Ring finger domain 213 255 IPR001841 -
Cmu11g0682 275 SMART ring_2 214 254 IPR001841 -
Cmu11g0682 275 MobiDBLite consensus disorder prediction 176 205 - -
Cmu11g0682 275 PANTHER TARGET OF ERK KINASE MPK-1 2 258 - GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0302 Cmu-Chr7:3004618 Cmu11g0682 Cmu-Chr11:7512760 1.90E-10 dispersed
Cmu10g2549 Cmu-Chr10:32221308 Cmu11g0682 Cmu-Chr11:7512760 4.20E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0682 K16283 - csv:101216306 502.286