Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu11g0706 | ATGATCTCACCGTCCATTCTTCTTGATCCTTCGGTGTACAACACACCACGTGTTCCAAACCAATTGGATCAGCGATTTATGCTCAGTCCCTGGCTCACGGATCCAACTAGCCAACAGAGGAGAAGCTTTGCACTTTCTTCCAAACCACAAAACTTGACCATCTTCTCTTCTCTCTGTGTCCATTACACTGCACCAATGGAGGAAAATTCAAGCCTTGTCACAGAATCAACTCTCACAAACTCCATGGAAGCAGAACCTCAAGAAGAAGAAAGAGACCCAGAAAGCAATCCCTTAAACCAACCCCTTCTCAAGAGAAGCAGAACTCTCTCTTCTAGTCCTCTTGCCATTGTTGGGGCAAAAGTTTCTCTCATTGAAAGCTTGGATTACGAGATCAATGAGAACGATCTGTTTAAGCATGATTGGAGAAGCAGATCCAGAGTTCAAGTGTTGCAGTACATATTCTCCAAATGGACATTGGCGTGTCTTGTTGGACTTCTTACAGGGATCATTGCCACTCTCATCAATCTTGCCATTGAAAATATTGCTGGCTACAAGCTTTTGAAAGTGGTCGGTTACATAAAGGAAGAAAGGTACTTAATGGGGTTCGCCTACTTTACCACTGCAAATTTCCTTCTGACTTTTGTTGCTGCTGTTCTCTGTGTATGCTTTGCTCCCACCGCAGCTGGGCCTGGCATACCAGAAATCAAAGCCTACCTCAATGGAATAGACACTCCTAATATGTTTGGTGCCACAACATTGATCGTTAAGATTATTGGGAGCATTGGAGCAGTGGCTGCTGGGCTAGATCTTGGGAAAGAGGGGCCTCTAGTACACATTGGCAGCTGCATTGCTTCTTTACTTGGACAGGGCGGTCCAGATAATTACCGAGTCAAATGGACATGGCTGCGCTATTTCAACAACGATCGTGATCGTCGGGATCTTATCACATGTGGGGCATCATCAGGCGTTTGTGCAGCTTTCCGAGCTCCAGTCGGGGGTGTCCTATTTGCTCTAGAAGAGGTGGCTACTTGGTGGAGGAGTGCCCTGCTGTGGAGGACCTTCTTCAGCACAGCCATTGTTGTGGTGGTGCTAAGAACTTTCATTGAAATATGCAAGGCAGGTGAATGTGGGCTGTTTGGAGAAGGAGGGCTTATCATGTTTGATGTCAGTGGTGTTTCTGTTAGTTACCATATCATGGACATCATACCAGTTGCTATCATTGGCCTTCTTGGTGGGTTCCTTGGAAGCCTTTACAATCATCTTCTCCACAAAATCCTCAGAGTTTACAACCTCATCAATCAGAAAGGAAGAATGCACAAACTAATACTGAGCTTAGGAGTATCACTCTTCACTTCAATCTGCCAATACAGTCTGCCATACCTTGTCCAATGCACCCCCTGCAACCCTTCTCTTCCAGCTTCCGCTTGCCCTACCAATGGCCGCTCCGGCAATTTCAAGCAGTTCAACTGTCCTAAAGGCCATTACAACGACCTCGCTACTCTTCTTCTCACCACCAACGACGACGCCGTTCGAAACATCTTCTCCATCAATACTTCCGCCGAGTATCAGCCTCTCTCCCTCGTCATCTTCTTCCTCCTCTACTGCGTGTTAGGGTTAATCACCTTCGGTATCGCCGTCCCCTCCGGTCTCTTCCTTCCAATCATCTTAATGGGCTCTGGCTATGGCCGCCTCATCGGCCTCCTCATGCGACCTTACACCAATCTCGATCAAGGACTCTTGGCTGTTCTTGGTGCTGCCTCCTTAATGGCCGGCTCCATGCGGATGACCGTTTCCCTCTGTGTCATATTCCTCGAACTCACCAACAATCTCCTTCTACTTCCGATTACCATGATTGTTCTTCTGATTGCGAAAACCGTCGGGGACAGTTTTAACCCTAGCATTTACGACATCATTCTGCATCTGAAGGGGCTTCCATTCCTGGACGCGAATCCGGAGCCGTGGATGAGGAACATCACCGTGGGCGAGCTGGCCGACGCGAAGCCGGCGGTGGTGACGCTGCGGGGATTAGAGAAAGTATCCCGCATTGTGGAGGTTCTTAGGAACACGACGCACAATGGATTCCCTGTTGTGGACGCCGATGCGGTGGTGCCGCCAGTGGGAATGGCGGTAGGAGCGACGGAGCTACACGGACTGGTGCTGAGAGCGCATCTGCTACAGGTGCTGAAGAAGAAATGGTTCTTGAGAGAGCGGAGGAGAACGGAGGACTGGGAGGTGAGGGAGAAATTTACATGGGTGGAATTAGCGGAGAGGGAAGGGAAGATCGAGGAGCTTGTAGTTACAAAAGAGGAGATGGAAATGTACGTTGATCTTCATCCTCTTACCAACACTACGCCTTATACAGTAATGGAAAGCATGTCCGTGGCCAAAGCTCTGGTTCTGTTCCGGCAAGTAGGGCTCCGCCATTTGTTGATTGTGCCCAAATATGAAGCAGCTGGCGTAAGCTCTTCTTCTTCTTCTTCTTCTTTTTCTTCTTCTTCATCTTCTTCTTTACTCCATCAATTACAGGCATCAAATTTCTGTAATTCATTGTTATTTGCAGGTTCCGCCGGTAATTGGGATTTTGACGAGGCAGGACCTGAGGCCATACAATATTCTGAGTGCATTTCCTCATCTGGAAAGAATCAAAGGCAACGAAAAACGGAATTGAACTATGAATTTTCTCATCTCATTCATGATTCAACGCAAATATACACTCTCCACACTCCACATATTCCAAACAAACTTTGTTCTTCTTCATCTGCTGCATTTCTTTCTTCTTCATATCATTGTTTCTATTATTTCTTCACCAATTTTGCCTTCTATTGA | 2826 | 47.2 | MISPSILLDPSVYNTPRVPNQLDQRFMLSPWLTDPTSQQRRSFALSSKPQNLTIFSSLCVHYTAPMEENSSLVTESTLTNSMEAEPQEEERDPESNPLNQPLLKRSRTLSSSPLAIVGAKVSLIESLDYEINENDLFKHDWRSRSRVQVLQYIFSKWTLACLVGLLTGIIATLINLAIENIAGYKLLKVVGYIKEERYLMGFAYFTTANFLLTFVAAVLCVCFAPTAAGPGIPEIKAYLNGIDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRVKWTWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAIVVVVLRTFIEICKAGECGLFGEGGLIMFDVSGVSVSYHIMDIIPVAIIGLLGGFLGSLYNHLLHKILRVYNLINQKGRMHKLILSLGVSLFTSICQYSLPYLVQCTPCNPSLPASACPTNGRSGNFKQFNCPKGHYNDLATLLLTTNDDAVRNIFSINTSAEYQPLSLVIFFLLYCVLGLITFGIAVPSGLFLPIILMGSGYGRLIGLLMRPYTNLDQGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLDANPEPWMRNITVGELADAKPAVVTLRGLEKVSRIVEVLRNTTHNGFPVVDADAVVPPVGMAVGATELHGLVLRAHLLQVLKKKWFLRERRRTEDWEVREKFTWVELAEREGKIEELVVTKEEMEMYVDLHPLTNTTPYTVMESMSVAKALVLFRQVGLRHLLIVPKYEAAGVSSSSSSSSFSSSSSSSLLHQLQASNFCNSLLFAGSAGNWDFDEAGPEAIQYSECISSSGKNQRQRKTELNYEFSHLIHDSTQIYTLHTPHIPNKLCSSSSAAFLSSSYHCFYYFFTNFAFY | 941 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 7935099 | 7939785 | - | CmPI595203_11g007060.1 | Cmu11g0706 | 429228 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu11g0706 | 941 | FunFam | Chloride channel ClC3 | 148 | 465 | - | - | |
| Cmu11g0706 | 941 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 100 | 824 | IPR051280 | GO:0009671(PANTHER)|GO:0009705(PANTHER)|GO:0043231(PANTHER) | |
| Cmu11g0706 | 941 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 667 | 820 | - | - | |
| Cmu11g0706 | 941 | PRINTS | Chloride channel signature | 320 | 339 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Chloride channel signature | 634 | 648 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Chloride channel signature | 546 | 566 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Chloride channel signature | 225 | 242 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Chloride channel signature | 578 | 594 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Chloride channel signature | 256 | 275 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Chloride channel signature | 596 | 615 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu11g0706 | 941 | MobiDBLite | consensus disorder prediction | 71 | 101 | - | - | |
| Cmu11g0706 | 941 | SUPERFAMILY | CBS-domain pair | 651 | 814 | IPR046342 | - | |
| Cmu11g0706 | 941 | PRINTS | Plant CLC chloride channel signature | 498 | 514 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Plant CLC chloride channel signature | 341 | 349 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Plant CLC chloride channel signature | 373 | 380 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Plant CLC chloride channel signature | 130 | 138 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu11g0706 | 941 | PRINTS | Plant CLC chloride channel signature | 355 | 365 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cmu11g0706 | 941 | Pfam | Voltage gated chloride channel | 213 | 627 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cmu11g0706 | 941 | SUPERFAMILY | Clc chloride channel | 134 | 649 | IPR014743 | - | |
| Cmu11g0706 | 941 | Gene3D | Clc chloride channel | 147 | 649 | - | - | |
| Cmu11g0706 | 941 | CDD | ClC_6_like | 125 | 647 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu11g0319 | Cmu-Chr11:3754137 | Cmu11g0706 | Cmu-Chr11:7935099 | 2.40E-210 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu11g0706 | K05016 | - | csv:101210008 | 1419.45 |