Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g0779 | ATGGATCATCAGTTCCAAGAAGAAAGTAGTGTGAAAAAAACAAGTAGTGGATCTATGAAATCGGAGAAGAAGATAAGAAAAGGGAGATTTGCGTTTGAAACCAGGAGCCAAGTTGATGTGCTTGACGATGGCTATCGCTGGAGAAAATATGGTCAAAAGGCTGTTAAGAACGACAAGTTTCCCAGGAGCTACTATAAGTGTTCACATCAAGGATGTAAAGTGAAGAAGCAAATTCAACGGCTTACAAATGATGAAGGAGTGGTATTAACAACCTACGAAGGAGTTCATTCCCATCCCATCGAAACCCCTCAAGATAACTTTCAACATATCTTGACTCACATGCAAATTTACCCTTCTTCCTTTTAA | 366 | 39.34 | MDHQFQEESSVKKTSSGSMKSEKKIRKGRFAFETRSQVDVLDDGYRWRKYGQKAVKNDKFPRSYYKCSHQGCKVKKQIQRLTNDEGVVLTTYEGVHSHPIETPQDNFQHILTHMQIYPSSF | 121 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 8329010 | 8330093 | - | CmPI595203_11g007790.1 | Cmu11g0779 | 429301 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g0779 | 121 | SUPERFAMILY | WRKY DNA-binding domain | 34 | 100 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu11g0779 | 121 | ProSiteProfiles | WRKY domain profile. | 36 | 101 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu11g0779 | 121 | SMART | WRKY_cls | 41 | 100 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu11g0779 | 121 | Pfam | WRKY DNA -binding domain | 42 | 99 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu11g0779 | 121 | Gene3D | WRKY domain | 25 | 101 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cmu11g0779 | 121 | FunFam | WRKY transcription factor 57 | 27 | 101 | - | - | |
Cmu11g0779 | 121 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cmu11g0779 | 121 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 12 | 104 | IPR044810 | GO:0003700(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu07g1525 | Cmu-Chr7:30462554 | Cmu11g0779 | Cmu-Chr11:8329010 | 2.50E-44 | dispersed | |
Cmu11g0463 | Cmu-Chr11:5135642 | Cmu11g0779 | Cmu-Chr11:8329010 | 3.70E-23 | dispersed | |
Cmu11g0779 | Cmu-Chr11:8329010 | Cmu07g0787 | Cmu-Chr7:19914567 | 3.30E-26 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7138 | PF03106 | WRKY | 2.40E-25 | CL0274 | Cmu | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g0779 | - | - | - | 0.0 |