Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0801 ATGGGTTCAATCAATTGGCTTGGCTTCTCTCTCTCCCCTCAACACCAACCCTCCGACCACCCTCCCGCCGCCGCCCCCTTCACCTCCGACCAAATCTCCCCCTCCGACGTCTCCGCCGTCTGCTTTGACAACCTTCCTTCTTCATATGGTGTTTATGAACCCTTCAACCGCAATAATCACTCTCAAGATTGGAATAGTATGAAGGGTTTAGGGTCGACTCAAAGTTCGGATTTTTCTGCTTTAATCGAAACCCAACACCAACCAAAGCTTGAAAATTTCCTCCGTCACCACTCTTTCACCGACCACGACCACGCCGCCGCCGCCGTCTACACCAATGCATCCGCCAACTACATGTTCCAAAATTGTTCTTTGGAGCTTCCATCTGAGGCTGGCGGCGGCGGCGGCGGTGGAAGACCCAACGCCGGTAACGGAAACACCAACAACACTAGCTCTATTGGGTTATCTATGATTAAGACATGGCTAAGAAATCAACCGGCGCCGCCGCAAGCGGTGACCAAGAGTGGCGGAGATCACGACGGTGTAGTTGGAATAGGTAATAATATTACAAGCCCACATACTTTATCACTGTCGATGAACACTGGTCCCCCACCGCAGTCGCAGTCCTCCGGCTCGGCGGCTCTACCACTTCTCACGGCCAACGGCGGCGAAAGCTCTTCCTCCGATAACAAACAAGGCAAATCTTCCGCTGCCGAGCTGGACGCTGAAAACGGCGCCGTTGAAGCTGCCCCTCGAAAATCTGTCGATACATTCGGACAAAGAACTTCCATCTACCGCGGAGTAACCAGGCATAGATGGACAGGAAGATATGAAGCTCATCTCTGGGACAATAGTTGCAGAAGAGAAGGACAGACTAGAAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCTGCTAGAGCTTACGATTTAGCGGCACTGAAATACTGGGGTACCACAACCACAACAAACTTTCCAATTAGTGATTACGAAAAAGAGTTAGAAGACATGAAGCACATGACTCGGCAAGAGTTTGTTGCGTCTCTAAGAAGGAAGAGTAGTGGGTTTTCTCGAGGAGCCTCAATTTACCGCGGAGTTACAAGACACCACCAGCATGGGAGATGGCAAGCAAGAATAGGGAGAGTTGCGGGGAATAAAGACCTCTACTTGGGAACTTTCAGTACACAAGAGGAAGCAGCTGAAGCATATGATATAGCCGCTATAAAGTTTAGGGGACTAAACGCAGTGACAAACTTTGACATGAGCCGTTACGATGTAAAAGCCATTCTTGAAAGCAACACATTACCTATCGGGGGCGCAGCCAAGCGCTTAAAAGACATCGACCACTCCGACATCCCTCTCGACCCCCAACGAACAGACGATACCATAACGTCACACCTCTCTGATGGAATAATAACCACCACCACTGCTCCCTACAGCGGTGGTGGATGGCCCACTCTCGCCTTCCACCACCATCCCTACGCCTTCCACTACCCGTATGCTACCCCACAACAACGGTTGTGGTGCAAGCAAGAACATGACACTACTGCCATCGCCGCCGACAACTTCTTCCCACATGGTGGGGCTATGGACTCGATGGACCACAGCTCGGGGTCGAGCTCCGTGGTTTACAGCAGTGGTAACGGAGATGGGTACAGCGGGAACTTCTTGATCCCAATGGGAGCGGGAGGGGCGGAAGGGAGCAGCAGCAACAACAACAATAGCGGATTGGGAGACATGGGAGAAGTGAATTTATTTGGTAGTTGTTCTAACGTGGATGATCCATACAATGCAACAAGAACGACCAATTTGTATAATTATCATAACCCCTCTCATCAGCTGCAACCACCGCCGCTGTCGTCGGGGTTGCAAGGTTCTAGCTGCAACAACTGGCTTCCTCCGGCAAGGTCGGTTTGTCACGGGGGAGCTCCGCCGCCTTTCACCATTTGGAATGACACTTAG 1962 51.17 MGSINWLGFSLSPQHQPSDHPPAAAPFTSDQISPSDVSAVCFDNLPSSYGVYEPFNRNNHSQDWNSMKGLGSTQSSDFSALIETQHQPKLENFLRHHSFTDHDHAAAAVYTNASANYMFQNCSLELPSEAGGGGGGGRPNAGNGNTNNTSSIGLSMIKTWLRNQPAPPQAVTKSGGDHDGVVGIGNNITSPHTLSLSMNTGPPPQSQSSGSAALPLLTANGGESSSSDNKQGKSSAAELDAENGAVEAAPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISDYEKELEDMKHMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGAAKRLKDIDHSDIPLDPQRTDDTITSHLSDGIITTTTAPYSGGGWPTLAFHHHPYAFHYPYATPQQRLWCKQEHDTTAIAADNFFPHGGAMDSMDHSSGSSSVVYSSGNGDGYSGNFLIPMGAGGAEGSSSNNNNSGLGDMGEVNLFGSCSNVDDPYNATRTTNLYNYHNPSHQLQPPPLSSGLQGSSCNNWLPPARSVCHGGAPPPFTIWNDT 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9496474 9500653 + CmPI595203_11g008010.1 Cmu11g0801 429323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0801 653 FunFam AP2-like ethylene-responsive transcription factor ANT 262 328 - -
Cmu11g0801 653 PRINTS Ethylene responsive element binding protein signature 264 275 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 PRINTS Ethylene responsive element binding protein signature 402 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 SUPERFAMILY DNA-binding domain 361 422 IPR016177 GO:0003677(InterPro)
Cmu11g0801 653 MobiDBLite consensus disorder prediction 165 253 - -
Cmu11g0801 653 FunFam AP2-like ethylene-responsive transcription factor 361 422 - -
Cmu11g0801 653 CDD AP2 262 328 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 205 455 - -
Cmu11g0801 653 MobiDBLite consensus disorder prediction 10 29 - -
Cmu11g0801 653 Pfam AP2 domain 363 412 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 SUPERFAMILY DNA-binding domain 262 328 IPR016177 GO:0003677(InterPro)
Cmu11g0801 653 CDD AP2 361 422 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 ProSiteProfiles AP2/ERF domain profile. 263 326 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 MobiDBLite consensus disorder prediction 130 151 - -
Cmu11g0801 653 Gene3D AP2/ERF domain 362 422 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 Gene3D AP2/ERF domain 263 328 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 SMART rav1_2 263 332 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 SMART rav1_2 362 426 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 ProSiteProfiles AP2/ERF domain profile. 362 420 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cmu11g0801 653 MobiDBLite consensus disorder prediction 186 236 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g2315 Cmu-Chr2:36697922 Cmu11g0801 Cmu-Chr11:9496474 3.50E-105 dispersed
Cmu06g1405 Cmu-Chr6:25215087 Cmu11g0801 Cmu-Chr11:9496474 3.40E-98 dispersed
Cmu07g1382 Cmu-Chr7:29152551 Cmu11g0801 Cmu-Chr11:9496474 7.30E-94 dispersed
Cmu10g1578 Cmu-Chr10:12056366 Cmu11g0801 Cmu-Chr11:9496474 2.20E-100 dispersed
Cmu10g2244 Cmu-Chr10:28540564 Cmu11g0801 Cmu-Chr11:9496474 3.60E-66 dispersed
Cmu10g2325 Cmu-Chr10:29517384 Cmu11g0801 Cmu-Chr11:9496474 1.10E-42 dispersed
Cmu10g2781 Cmu-Chr10:34420501 Cmu11g0801 Cmu-Chr11:9496474 1.60E-39 dispersed
Cmu11g0801 Cmu-Chr11:9496474 Cmu05g1107 Cmu-Chr5:10487357 3.70E-07 dispersed
Cmu11g0801 Cmu-Chr11:9496474 Cmu08g1610 Cmu-Chr8:27776424 1.30E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7140 PF00847 AP2 3.40E-09 CL0081 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0801 K09285 - csv:101219473 1046.57