Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0809 ATGCAGACAGGGCCGACCGACGGGAACAACTTGCAAACTGGTGTCAAAACCCTAAAAAATCAACTCCATGAGATATTGGCAAATTCTAAACCTTGTCCGAAATGCAAACGTCCTATTGAGAAAAATCAAGGGTGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTTTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCTGAAAAGCGTAGAGAGATGGCCAAGAATTCTCTGGAGAGATATACTCATTATTATGAAAGATGGGCTACAAACCAATCGATGCTCTTCCGCTCTTTGACTTCTCCATCCACCACCAACTTTGACTACCATAGTTTGTCCTTGGCCTTTTGTCGCCACCCTCGGCGCCTCTTCAAGGTGGTCCCTTCATCCTCTGAGCTCTGTCCTCTGTCAACCATCCTCGGCCTTCTGCTCACCCTCGGCCGCCACTTCATATTTTACCCAACCCTTTCAGTCCTCTCAGACCGTGTCTCGGGTCACCAGTTTGGTACCCCTCACGCCTTTTCTCAATTTAAGATGTCTGTGTTCAATTTGGAGGCAACGGACGTACTGCTTTCTCCTAAATTTTCTGGCCCTTCATCGTCTTCTTCACCAATCATTGACTGTGATGCAGAAACAATGGTCAGTCTTATTGGTTGTGTTCTCGTTTCCTTTGCTAGTTGTCCTTCATTGTTTTATCTTTCTAGGCAAAAAGCACTTGCGGATCTCCATCAAATGCAAACCGTGCATCTCGAAAAGTTAAGTGACATTCAGTGCCAACCTGAGTCACAGCTAAAGTTCATAAGCGAAGCATGGCTACAGATTGTCGAGTGTAGGCGAGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATGCTTACCTAAATGCTGCTGATGGTCCTTCAAAAGATTTCAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGGAATTACTTCGAGAATTTAGTACGTGCACTTGAGAATGGTCTGTCAGATGTGGATTCCCATGGTACCTGCAGCAAAACAGTAAGCTCAAAGAGTACTAGTGGCTGTAGGAGTAAAGGTGGGAAAGGCAAGATGAGTGCATTCAGAGCTAGCGGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTTGCGAATGTTAAATCAGCTACCTTCTGCCAGATGTGCCAGCAACGGCGATAA 1398 45.28 MQTGPTDGNNLQTGVKTLKNQLHEILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSMLFRSLTSPSTTNFDYHSLSLAFCRHPRRLFKVVPSSSELCPLSTILGLLLTLGRHFIFYPTLSVLSDRVSGHQFGTPHAFSQFKMSVFNLEATDVLLSPKFSGPSSSSSPIIDCDAETMVSLIGCVLVSFASCPSLFYLSRQKALADLHQMQTVHLEKLSDIQCQPESQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHAYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTVSSKSTSGCRSKGGKGKMSAFRASGSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9803610 9813814 + CmPI595203_11g008090.1 Cmu11g0809 429331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0809 465 MobiDBLite consensus disorder prediction 409 435 - -
Cmu11g0809 465 SMART zf_4 440 464 IPR001876 -
Cmu11g0809 465 ProSiteProfiles Zinc finger RanBP2 type profile. 438 465 IPR001876 -
Cmu11g0809 465 CDD Rcat_RBR_ARI7-like 28 82 - -
Cmu11g0809 465 ProSiteProfiles TRIAD supradomain profile. 1 83 IPR044066 -
Cmu11g0809 465 Pfam IBR domain 27 67 - -
Cmu11g0809 465 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 28 120 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Cmu11g0809 465 Gene3D - 437 465 - -
Cmu11g0809 465 ProSitePatterns Zinc finger RanBP2-type signature. 442 461 IPR001876 -
Cmu11g0809 465 SUPERFAMILY Ran binding protein zinc finger-like 438 465 IPR036443 -
Cmu11g0809 465 Gene3D - 12 133 - -
Cmu11g0809 465 Gene3D - 259 397 - -
Cmu11g0809 465 SUPERFAMILY RING/U-box 19 83 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g0421 Cmu-Chr8:13598164 Cmu11g0809 Cmu-Chr11:9803610 7.50E-124 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0809 K11968 - csv:101218052 404.445