Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0838 ATGGGTAATCCCATTGAGGTTTACGGTGTCGCGGTTGTTGTTGTGGGGATGGTGTTGTTTGATGTAAGTGTTGCCCAATTTGAAGGAGGTGGAAACAGTCCATTCAGAGATGGCGACGGCAGCGGCAGGAGACAGGTGGAGATGGTACCGGCTATGTTTGTATTCGGAGACTCTCTCATTGACAATGGAAATAACAATAATCTTCCCTCTTTTGCCAAGGCCAACTATTTCCCCTATGGCATTGATTTCAATGGCGGCCCAACTGGGCGCTTCTCCAATGGCTACACCATGGTCGATGAAATAGCGGAGCTGCTAGGACTCCCATTAATCCCAGCCTTCTCTCAAGTTTCTGGACCCCAATCTCTGCATGGAGTCAACTATGCATCTGCTGCGGCCGGGATTCTTGACGCTACGGGGAGAAACTTTGTGAGTCGCATACCTTTCAATCAACAAATCAGAAACTTCGAGAACACGCTGGATGAGATTAGTAACAATGTAGGGGCAGGGAAGGTGGGAGAATCCATCGGACGGTGCATATTCTTTGTGGGAATGGGAAGCAACGACTACCTCAATAACTATCTTATGCCAAATTACCCCACTCGAAATCAGTACAATGCTGAACAGTACGCGGACTTGTTGGTCGGCCAATATACGGAGCAGCTCACTAGGCTGTACAATCTAGGAGGTAGAAGGTTTGCGATAGCAGGTTTAGGGCTGATGGGTTGCATTCCAAGCATCCTAGCACAGAGCCCATCAGGAAGGTGCTCAGAAGAAGTGAACCAACTTGTTGGACCATTCAATATAAATGTGAAGAGAATGATAAAGCAGCTGAATACCAATCTTCCAGGAGCAAGATATAGTTACATTGACATAGAACACATGTTCCAAGACTTGCTTCTCAATTCTAGATTTTATGGTTTAAGTGTTTTGAATAGAGGATGCTGTGGAATTGGGAGGAACAGAGGCCAAATCACTTGCCTTCCCTTCCAAACTCCTTGTAGTAATCGAGATGAGTACATCTTTTGGGATGCATTCCATCCTACTGAAGCAGTTAACATTATCATGGCTAGGAAGGCTTTTAATGGTGACCAATCTGTTATTTTCCCTTTCAATATCCAACAGCTAGCTACTTCTCTTTGA 1140 45.44 MGNPIEVYGVAVVVVGMVLFDVSVAQFEGGGNSPFRDGDGSGRRQVEMVPAMFVFGDSLIDNGNNNNLPSFAKANYFPYGIDFNGGPTGRFSNGYTMVDEIAELLGLPLIPAFSQVSGPQSLHGVNYASAAAGILDATGRNFVSRIPFNQQIRNFENTLDEISNNVGAGKVGESIGRCIFFVGMGSNDYLNNYLMPNYPTRNQYNAEQYADLLVGQYTEQLTRLYNLGGRRFAIAGLGLMGCIPSILAQSPSGRCSEEVNQLVGPFNINVKRMIKQLNTNLPGARYSYIDIEHMFQDLLLNSRFYGLSVLNRGCCGIGRNRGQITCLPFQTPCSNRDEYIFWDAFHPTEAVNIIMARKAFNGDQSVIFPFNIQQLATSL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10626220 10627613 - CmPI595203_11g008380.1 Cmu11g0838 429360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0838 379 CDD SGNH_plant_lipase_like 50 363 IPR035669 -
Cmu11g0838 379 Pfam GDSL-like Lipase/Acylhydrolase 53 357 IPR001087 GO:0016788(InterPro)
Cmu11g0838 379 Gene3D SGNH hydrolase 43 364 IPR036514 -
Cmu11g0838 379 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 46 376 IPR051238 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0838 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1667 Cmu-Chr6:27770933 Cmu11g0838 Cmu-Chr11:10626220 6.50E-60 dispersed
Cmu07g1137 Cmu-Chr7:26487807 Cmu11g0838 Cmu-Chr11:10626220 6.50E-63 dispersed
Cmu08g0068 Cmu-Chr8:1488323 Cmu11g0838 Cmu-Chr11:10626220 1.00E-147 dispersed
Cmu08g0069 Cmu-Chr8:1500374 Cmu11g0838 Cmu-Chr11:10626220 5.90E-90 dispersed
Cmu10g1329 Cmu-Chr10:6201624 Cmu11g0838 Cmu-Chr11:10626220 6.10E-60 dispersed
Cmu10g1331 Cmu-Chr10:6231547 Cmu11g0838 Cmu-Chr11:10626220 5.40E-56 dispersed
Cmu11g0838 Cmu-Chr11:10626220 Cmu11g1046 Cmu-Chr11:18478528 2.60E-61 dispersed
Cmu11g0838 Cmu-Chr11:10626220 Cmu03g1322 Cmu-Chr3:8357022 4.50E-98 transposed
Cmu11g0838 Cmu-Chr11:10626220 Cmu01g2354 Cmu-Chr1:35612908 4.50E-98 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1661 . . . . . . . Bma01g02439 . . . . Car01g00778 . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00039 . . . . . . . . . . . . . . . . Cpe02g01018 . . . . . . . Cla11g00844 Cam11g0875 Cec11g0875 Cco11g0870 Clacu11g0987 Cmu11g0838 Cre11g1319 Lsi08g00048 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002428 2 2 3 2 3 2 2 1 2 2 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 3 2 3 61