Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0878 ATGGCTGAATCTTTATCATCATCGTCGTTTCAACCCATTTCTACTCCGATCAATAATATTGCAGTTCAATATGATGTGTTCGTGAGTTTTCGAGGCGAAGATGTAAGAAATAATTTTGTTAGTCATCTTCAGGCAGCATTCGAACGCAAAGGAACCGCAACTTTTTTCGATGAAGAGCTCAAGAGAGGACAGCAAATTGCTCCCGCTCTTCTTAAAGCTATACACAACAATCTTCCATTTCATCGTCATCGTCCTTCCGATTTTCTACGGCGTAGATCCATCAAATGTCCGAAAGCAAACAGGGAGTTATGCAGAAGCCATTCACTAAACACCAGGAAACTCTCCAACAAGATGAAATACAAAGATGGAGGGATGCTCTTACGGAAATTGCAAATTTGTCTGGTTTGGATTTCGCTAACTGACCGTTTAACATTGAATGATGTTGATGGTGTGGTTGGAATTGAAGATCGTGTGGAGCGTATTGAGTCTTGTCTACGTGATTCCAATGACGATGTTCGCATTTTAGGCATTTGGGGAATGGGCGGCATTGGTAAAACTACAGTTGCCACAGCTTTGTTTCATAAAATAAAATATGAATTTGATGGTTATTGCTTTCTTGAGAACGTTAGGGAAAGTTCTGGTAGAAATGGACAGGGACTACCAAATTTACGAAATATGCTTCTATCTCAAGTTATGCAGGAACAACAACACCTTTCAATGTATATTTCACGAGCTTTCCTTAAAAATAGGTTGAGTGGAAAGAAGGTGCTCATTGTTCTTTATGATATTGATGACATAGAACAATTAGAGAATTTAGTTGGAGGACGCAATTGGTTTGGAGTAGGAAGTAGAGTTGTCATAACAACTAGAAACAGACAACTTCTTACTGATCAGGTAGATGAAGTTTATGGCTATGCAAAGGATCAGTTGTCTGATGAGGATGGTTTGCTTCTCTTTAGCCGCTATGCGTTTAGAACAAGCCAACCGCCAGAGGATTACCTTGAGCTTTCTAGAAAGGTTATGCATTATGCATCCGGCATTCCCTTAGCTCTCAAGCTCTTAGGTTCTTATCTACGTAAAAAGGACGAAAGAACGTGGAAAAGTGCATTGGCTAGACTAGAAAGATTTTCCGACGATGAAATATATGGGAAAGTTCTAGAACTAAGCTTTGAAGGACTTAATTCGAAGGAGAAAGACATTCTACTTGATGTAGCATGTTTCTTCAAGGGAGAGGATGTTGAACTTGCCAGTTTAGTATGGGAAGCTTGTGGCTTTTTGTCGCACGATGCTATTTCTGTACTTAGTGACAAGTGTCTTATATCGATGCAAAATAATAACTCTCGACTCTGGATGCATGATTTGATTCAAGAGATGTGGAAAGCAATTGTTCGGAAAGAGAGCGTTGAACCAGGGGACTTCAAAAATTCAATGCATAATTTGGACTTAGTTGTCAGACAACTGTGGAAAGGACACAGGACGTTCAAACGTTTAAAACATATTGACCTGAACAATTCTAAGCATCTATCTGAAATACCTGATCTATCAGGAGCTCAGTATCTTGAGCATATTGATTCACACGGCTGCACAGAATTATCTAAAATCCACTCTTCTGTCAGTACTCTAAGCAAACTCACTTATCTGAATCTAAGTGGTTGTAGGAAGCTACGAAATCTTGCGAGCAACATTTGTATGGAACGTCTCGAAAGGCTTGTTCTCCATGGTTGTGAAAACCTCCAAAACTTTCCAGACATTTCTGGTAATATGGAACATTTGTATGAATTTTCCCTACATGGAACTGGTGTGTCAAATCTGCCTTCATTCATTGAAAGTCTGACTGGTCTTAGTAAGCTTAAACTTTCAAACTGCAAAAAACTCGTGGGTCTTCCAAATAGCATCTGTAATTTGAAACGTCTCGAAAAACTTTTTCTCTCTGGTTGTGAAAACCTCCAACATCTTCCGGAGAACATTGGGAATCTAGAATCGTTATCAGAGTTTTATGTAGATGGAACTTCAATTAAACACGTCCCATCCTCCATTATCTATTTGAAGAATATTTCAAGATTGTCATTTGGTGGGTGTATAGGAATAATAAAGACATCATCTTCCCAATCCCATTGGTTGTCTAGGTTAGTTCCTAGAAGTAGAAGCAGCAGTAGTCCAAGTTGTATGGGTGGTTTGCAGTTGCCTCCTTTGGGGGGCTTTCAAAATCTTACTAGTCTTTGTCTTAGTAACTGCAATCTTGTGGAAGCGCCGAGTGGTCTACACAACTTGCCCTCCTTGAGTGAACTTGACTTGAGTGGAAATAACTTTGAGACCTTACCTCAAACCATATTCTACAATCTTTCTAGTTTATCTACTCTAGAGTTGAGTTATTGCACGAGGCTACGATCATTACCGGACCTTCCACCCAGCCTCCATACTTTGCTGGCAGATGAATGCACATCCCCGGAATCAATCATGAGCCTTAAATCTTTGTTCGGAGGAACTGGTCCTAGGAAAAGAGAAGGGCAGGAGTTATATGATCTGGGTATTTATCATGGTGGCCTAGGGCTTAAGGGTGAGGGTGACATGGCCTTTCATTCTGATGTCAGTGTTCACTTTCGATTGACATTTCGACACGATAGTGAGAATATCGACCGAAGCGGTTTCCATTTCTTGTGTGGAAGACAGAGCGGGGTGTCTTTTAAAGAAGATATTGTTGTTTTTGAACTTGTTCGGTGGGTATTTCGACATCGGCCGTGCCCCTGTAAAGGTGAAAAAGTGTGCAGTTCGCTTGGTATACGTGGAAGGAAAAACGCAAACTACTTTCTTACTCGGTTCCTTTGGATCCATCGGTTCAGGCCTATAACGCCTCCTGTACAAAGAGTGCTTATAATTAAGTTGTTTATCAGCCGACACTTCGAAGACCATGGAGCATATAATATTGTATGGCTGCGGTTGGGGTTGGTGGCTCTGTCGGTCTTCAATAATTCTGTGATGCCTGGTTCTTGCATCCAGGAGAAGTCGCCTACCACCTCTCCCACCTTCACGCCGGCCACAGCCAAATCTCGCCGTTGA 3057 41.15 MAESLSSSSFQPISTPINNIAVQYDVFVSFRGEDVRNNFVSHLQAAFERKGTATFFDEELKRGQQIAPALLKAIHNNLPFHRHRPSDFLRRRSIKCPKANRELCRSHSLNTRKLSNKMKYKDGGMLLRKLQICLVWISLTDRLTLNDVDGVVGIEDRVERIESCLRDSNDDVRILGIWGMGGIGKTTVATALFHKIKYEFDGYCFLENVRESSGRNGQGLPNLRNMLLSQVMQEQQHLSMYISRAFLKNRLSGKKVLIVLYDIDDIEQLENLVGGRNWFGVGSRVVITTRNRQLLTDQVDEVYGYAKDQLSDEDGLLLFSRYAFRTSQPPEDYLELSRKVMHYASGIPLALKLLGSYLRKKDERTWKSALARLERFSDDEIYGKVLELSFEGLNSKEKDILLDVACFFKGEDVELASLVWEACGFLSHDAISVLSDKCLISMQNNNSRLWMHDLIQEMWKAIVRKESVEPGDFKNSMHNLDLVVRQLWKGHRTFKRLKHIDLNNSKHLSEIPDLSGAQYLEHIDSHGCTELSKIHSSVSTLSKLTYLNLSGCRKLRNLASNICMERLERLVLHGCENLQNFPDISGNMEHLYEFSLHGTGVSNLPSFIESLTGLSKLKLSNCKKLVGLPNSICNLKRLEKLFLSGCENLQHLPENIGNLESLSEFYVDGTSIKHVPSSIIYLKNISRLSFGGCIGIIKTSSSQSHWLSRLVPRSRSSSSPSCMGGLQLPPLGGFQNLTSLCLSNCNLVEAPSGLHNLPSLSELDLSGNNFETLPQTIFYNLSSLSTLELSYCTRLRSLPDLPPSLHTLLADECTSPESIMSLKSLFGGTGPRKREGQELYDLGIYHGGLGLKGEGDMAFHSDVSVHFRLTFRHDSENIDRSGFHFLCGRQSGVSFKEDIVVFELVRWVFRHRPCPCKGEKVCSSLGIRGRKNANYFLTRFLWIHRFRPITPPVQRVLIIKLFISRHFEDHGAYNIVWLRLGLVALSVFNNSVMPGSCIQEKSPTTSPTFTPATAKSRR 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11650910 11657961 + CmPI595203_11g008780.1 Cmu11g0878 429400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0878 1018 Gene3D - 21 77 IPR035897 -
Cmu11g0878 1018 Pfam NB-ARC domain 155 376 IPR002182 GO:0043531(InterPro)
Cmu11g0878 1018 SMART LRR_typ_2 635 659 IPR003591 -
Cmu11g0878 1018 SMART LRR_typ_2 541 565 IPR003591 -
Cmu11g0878 1018 SMART LRR_typ_2 734 756 IPR003591 -
Cmu11g0878 1018 SMART LRR_typ_2 757 780 IPR003591 -
Cmu11g0878 1018 Gene3D - 309 394 IPR042197 -
Cmu11g0878 1018 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 484 606 IPR044974 GO:0006952(InterPro)
Cmu11g0878 1018 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 403 IPR027417 -
Cmu11g0878 1018 Gene3D Ribonuclease Inhibitor 716 829 IPR032675 -
Cmu11g0878 1018 SUPERFAMILY L domain-like 450 804 - -
Cmu11g0878 1018 ProSiteProfiles TIR domain profile. 22 143 IPR000157 GO:0007165(InterPro)
Cmu11g0878 1018 PRINTS Disease resistance protein signature 344 358 - -
Cmu11g0878 1018 PRINTS Disease resistance protein signature 174 189 - -
Cmu11g0878 1018 PRINTS Disease resistance protein signature 779 795 - -
Cmu11g0878 1018 PRINTS Disease resistance protein signature 250 264 - -
Cmu11g0878 1018 Pfam TIR domain 23 76 IPR000157 GO:0007165(InterPro)
Cmu11g0878 1018 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 76 IPR035897 -
Cmu11g0878 1018 Pfam Leucine rich repeat 736 792 IPR001611 GO:0005515(InterPro)
Cmu11g0878 1018 Gene3D - 141 302 IPR027417 -
Cmu11g0878 1018 Gene3D Ribonuclease Inhibitor 471 715 IPR032675 -
Cmu11g0878 1018 ProSiteProfiles Leucine-rich repeat profile. 759 780 IPR001611 GO:0005515(InterPro)
Cmu11g0878 1018 MobiDBLite consensus disorder prediction 999 1018 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0878 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g0878 Cmu-Chr11:11650910 Cmu11g1094 Cmu-Chr11:20221744 8.40E-75 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g00805 Cam11g0842 Cec11g0828 . Clacu11g1015 Cmu11g0878 Cre11g1288 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013419 0 0 0 0 0 1 0 1 2 0 1 1 0 0 1 0 1 0 0 1 0 1 0 4 2 1 1 0 1 5 24