Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0973 ATGGAGCATGGAGATGTTGTGTCGAAGGGCATGGTGTCAGACCCTTCGAGTTCATACCAAAAAATCATAATAGTTGCGGCTATTGCAGCCGGAGTCCAATTTGGTTGGGCTCTCCAGCTTTCGTTGCTGACACCTTACGTACAGCAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGTGGGCCATTATCAGGGCTTATTGTCCAACCCACTGTTGGATATTACAGCGATCGTTGCACTTCTAGGTTTGGTCGTCGTCGACCATTCATTGCTGCTGGGGCTGGCTTTGTGGCGGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGATATTGGGCATGCAGCGGGAGATCAACTTGCTGCACGCACAAAACCAAGGGCTGTAGCCATATTTGTTGTCGGATTCTGGGTTCTTGATGTCGCTAACAACATGCTGCAAGGCCCTTGTAGAGCTTTGTTGGCAGATATGTCAGGTACCAACCACAAGAAGATGAGAATGGCCAATGGTTTTTTCTCCTTCTTCATGGGCGTAGGGAATGTTTTGGGTTACGCAGCTGGGTCCAATAACACACTCTATAAAGTCCTTCCCTTCACAATAACCAAAGCATGTGACACTTACTGTGCCAACCTCAAAACATGCTTCTTGATCGACATTGTGTTTCTCCTCCTCATTACCACCTTTGCCGTGTTTACAGTCAGCGAGAAGCAATTTGAGCGCTTGGAGATTGACGAAGAAGCAACACCCTTTTTCGGGAAGTTGCTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATCTTGTTACTCGTAACAGCTTTGAACTGGATTGGTTGGTTCCCATTTATAATGTATGACACTGACTGGATGGGTTTGGAAGTGTATGGAGGAAAGCCAAATGGAACTCCAGAACAAGTCAAGTTCTATGACCTTGGTGTTCGTTCTGGGGCCCTTGGGTTGATGATAAACTCCTTTGTTCTAGGATTTTCAGCTTTAGCGATTGAGCCAATTAGCCGTATTCTAGGAGGTCTCAGGTGGTGGTGGGGAATTGTGAACATCATATTCACCATTTGCATGGGATCCACCGTCGTTGTTACAAAGGTTGCTGAGCGCTGGAGGTCCATTAACGGTTTGCGCCTTCCTCCCGCGAACATTAAGGCCGGAGCTTTTTCCATCTTTGCAGTCTTGGGTATTCCACTATCGGTCACTTTTAGCGTTCCCTTTGCACTTGCATCCATCTTTTCTTCAGAATCTGATGCGGGTCAAGGCCTCTCTTTGGGAATTCTCAACCTCTTCATTGTCATTCCACAGTTCATTGTGTCTGCAGTTAGTGGACCTTTAGATGCAGCTTTCGGAGGTGGAAACTTACCCGCATTCGTACTGGGTGGAATTGCTTCTTTTGCAAGTGCAATGTGTGCTATGTTCGTCCTTCCAGATCCACCACCTCAATCCGAAGTCTCCTTGACAGTGGGGGCCGGCCATTGA 1488 47.38 MEHGDVVSKGMVSDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIAAGAGFVAAAVFLIGFAADIGHAAGDQLAARTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSGTNHKKMRMANGFFSFFMGVGNVLGYAAGSNNTLYKVLPFTITKACDTYCANLKTCFLIDIVFLLLITTFAVFTVSEKQFERLEIDEEATPFFGKLLGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPNGTPEQVKFYDLGVRSGALGLMINSFVLGFSALAIEPISRILGGLRWWWGIVNIIFTICMGSTVVVTKVAERWRSINGLRLPPANIKAGAFSIFAVLGIPLSVTFSVPFALASIFSSESDAGQGLSLGILNLFIVIPQFIVSAVSGPLDAAFGGGNLPAFVLGGIASFASAMCAMFVLPDPPPQSEVSLTVGAGH 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14174638 14176217 - CmPI595203_11g009730.1 Cmu11g0973 429495

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0973 495 PANTHER SUGAR TRANSPORTER 14 477 - GO:0005773(PANTHER)|GO:0005886(PANTHER)|GO:0008506(PANTHER)|GO:0016020(PANTHER)
Cmu11g0973 495 CDD MFS_SLC45_SUC 31 476 - -
Cmu11g0973 495 SUPERFAMILY MFS general substrate transporter 22 484 IPR036259 -
Cmu11g0973 495 Pfam MFS/sugar transport protein 28 279 - -
Cmu11g0973 495 NCBIfam sucrose/proton symporter 19 482 IPR005989 GO:0005886(InterPro)|GO:0008515(InterPro)|GO:0015770(InterPro)
Cmu11g0973 495 Gene3D MFS general substrate transporter like domains 16 486 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0973 K15378 - - csv:116401998 901.353
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu08g1134 Cmu-Chr8:23727452 Cmu11g0973 Cmu-Chr11:14174638 5.60E-128 dispersed
Cmu09g2092 Cmu-Chr9:37016959 Cmu11g0973 Cmu-Chr11:14174638 5.70E-114 dispersed
Cmu11g0973 Cmu-Chr11:14174638 Cmu11g1016 Cmu-Chr11:16890517 1.70E-286 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu11g1016 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 3.1e-174 608.6
Cmu11g0973 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.6 6.8e-174 607.4
Cmu08g1134 . 32 484 Sucrose Transporter Gene Family AT1G22710 51.4 2.4e-134 476.1
Cmu11g1016 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 8.0e-172 600.5
Cmu11g0973 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 1.4e-171 599.7
Cmu08g1134 . 31 484 Sucrose Transporter Gene Family AT2G14670 52.1 2.8e-132 469.2
Cmu11g1016 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cmu11g0973 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 3.3e-143 505.4
Cmu08g1134 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 7.3e-111 397.9
Cmu09g2092 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.1e-182 635.6
Cmu11g1016 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 7.5e-162 567.4
Cmu11g0973 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 1.3e-161 566.6
Cmu08g1134 . 31 484 Sucrose Transporter Gene Family AT5G06170 50.8 7.8e-127 451.1
Cmu11g1016 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.7e-170 594.3
Cmu11g0973 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 9.8e-170 593.6
Cmu08g1134 . 31 484 Sucrose Transporter Gene Family AT5G43610 51.5 1.7e-129 459.9
Cmu08g1134 . 18 485 Sucrose Transporter Gene Family AT1G09960 70.6 1.5e-197 686.0
Cmu11g0973 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.5 5.8e-133 471.5
Cmu11g1016 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.3 7.6e-133 471.1
Cmu11g0973 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 4.6e-170 594.7
Cmu11g1016 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 1.0e-169 593.6
Cmu08g1134 . 31 484 Sucrose Transporter Gene Family AT1G71880 52.7 4.6e-130 461.8
Cmu11g1016 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 1.3e-164 576.6
Cmu11g0973 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cmu11g0973 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 4.6e-170 594.7
Cmu11g1016 . 14 495 Sucrose Transporter Gene Family AT1G71880 61.3 1.0e-169 593.6
Cmu08g1134 . 31 484 Sucrose Transporter Gene Family AT1G71880 52.7 4.6e-130 461.8
Cmu11g1016 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.8 3.1e-174 608.6
Cmu11g0973 . 14 484 Sucrose Transporter Gene Family AT1G22710 62.6 6.8e-174 607.4
Cmu08g1134 . 32 484 Sucrose Transporter Gene Family AT1G22710 51.4 2.4e-134 476.1
Cmu09g2092 . 152 599 Sucrose Transporter Gene Family AT2G02860 70.1 2.1e-182 635.6
Cmu08g1134 . 18 485 Sucrose Transporter Gene Family AT1G09960 70.6 1.5e-197 686.0
Cmu11g0973 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.5 5.8e-133 471.5
Cmu11g1016 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.3 7.6e-133 471.1
Cmu11g1016 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 1.3e-164 576.6
Cmu11g0973 . 17 484 Sucrose Transporter Gene Family AT1G71890 60.3 2.2e-164 575.9
Cmu11g1016 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 5.7e-170 594.3
Cmu11g0973 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 9.8e-170 593.6
Cmu08g1134 . 31 484 Sucrose Transporter Gene Family AT5G43610 51.5 1.7e-129 459.9
Cmu11g1016 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 1.9e-143 506.1
Cmu11g0973 . 14 409 Sucrose Transporter Gene Family AT1G66570 60.8 3.3e-143 505.4
Cmu08g1134 . 31 424 Sucrose Transporter Gene Family AT1G66570 50.5 7.3e-111 397.9
Cmu11g1016 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 8.0e-172 600.5
Cmu11g0973 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.0 1.4e-171 599.7
Cmu08g1134 . 31 484 Sucrose Transporter Gene Family AT2G14670 52.1 2.8e-132 469.2
Cmu11g1016 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 7.5e-162 567.4
Cmu11g0973 . 8 479 Sucrose Transporter Gene Family AT5G06170 60.5 1.3e-161 566.6
Cmu08g1134 . 31 484 Sucrose Transporter Gene Family AT5G06170 50.8 7.8e-127 451.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60