Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0982 ATGGAGTTTCATTTCGTCTTTTTAGTGCCCTTTCTCTCACTCCTTTCTTCCGCCGCCGCCTGGATTAATGCTCATGCCACCTTCTACGGCGGCAGCGATGCTTCCGGGACAATGGGTGGAGCTTGTGGGTATGGGAATCTTTACAGTGAAGGCTACGGAACCAACACTGCAGCAGTTAGCACTGCTCTTTTCAACAATGGGTTGAACTGTGGGTCTTGTTATGAAATCAAGTGCGTTAATGACCCGAAATGGTGCCTCCATGGCTCTATTTTGGTCACTGCAACCAATTTCTGTCCGCCCAATAATGCACTTCCTAATAACGCCGGCGGCTGGTGCAACCCTCCCCTCCACCACTTTGACCTCTCCCAGTCCGTCTTCCTCCGCATTGCTCAATACCACGCCGGCATCGTCCCAGTCGTCTATCGCAGAGCTCCATGTAAGAGGAAGGGAGGAGTAAGGTTCACAATCAATGGGCATTCCTACTTCAACTTAGTGCTAATAACCAACGTCGGGGGCGCCGGGGATGTGCATGCGGTGTCCGTGAAAGGATCTAGAACTGGTTGGCAATCAATGTCCAGAAATTGGGGACAGAACTGGCAAAGCCACACCTATTTGGATGGTCAAACCCTCTCTTTCAAGCTCACTACTAGCGACGGCCGTACGCTTATTTCCAACAATGTCGTTCCTGCCGGCTGGTCCTTTGGCCAGACCTTCACCGGCGCCCAATTCCGGTGA 735 52.11 MEFHFVFLVPFLSLLSSAAAWINAHATFYGGSDASGTMGGACGYGNLYSEGYGTNTAAVSTALFNNGLNCGSCYEIKCVNDPKWCLHGSILVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQSVFLRIAQYHAGIVPVVYRRAPCKRKGGVRFTINGHSYFNLVLITNVGGAGDVHAVSVKGSRTGWQSMSRNWGQNWQSHTYLDGQTLSFKLTTSDGRTLISNNVVPAGWSFGQTFTGAQFR 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15107540 15109097 - CmPI595203_11g009820.1 Cmu11g0982 429504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0982 244 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
Cmu11g0982 244 SUPERFAMILY Barwin-like endoglucanases 12 169 IPR036908 -
Cmu11g0982 244 Pfam Lytic transglycolase 56 141 IPR009009 -
Cmu11g0982 244 FunFam Expansin 151 243 - -
Cmu11g0982 244 PANTHER EXPANSIN-A15 8 243 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 SMART dpbb_1 56 141 IPR007112 -
Cmu11g0982 244 PRINTS Expansin/Lol pI family signature 134 150 IPR007118 GO:0005576(InterPro)
Cmu11g0982 244 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Cmu11g0982 244 PRINTS Expansin/Lol pI family signature 188 202 IPR007118 GO:0005576(InterPro)
Cmu11g0982 244 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576(InterPro)
Cmu11g0982 244 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576(InterPro)
Cmu11g0982 244 PRINTS Expansin/Lol pI family signature 20 35 IPR007118 GO:0005576(InterPro)
Cmu11g0982 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 151 IPR007112 -
Cmu11g0982 244 Gene3D - 13 147 IPR036908 -
Cmu11g0982 244 PRINTS Expansin signature 51 65 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 PRINTS Expansin signature 109 126 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 PRINTS Expansin signature 126 139 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 PRINTS Expansin signature 150 162 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 PRINTS Expansin signature 90 100 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 PRINTS Expansin signature 162 183 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 PRINTS Expansin signature 197 218 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 PRINTS Expansin signature 226 242 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 PRINTS Expansin signature 78 89 IPR002963 GO:0009664(InterPro)
Cmu11g0982 244 FunFam Expansin 13 147 - -
Cmu11g0982 244 Gene3D - 151 243 IPR036749 -
Cmu11g0982 244 CDD DPBB_EXPA_N 21 146 - -
Cmu11g0982 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 161 240 IPR007117 -
Cmu11g0982 244 Pfam Expansin C-terminal domain 152 229 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu04g1254 Cmu-Chr4:26999717 Cmu11g0982 Cmu-Chr11:15107540 1.90E-86 dispersed
Cmu06g1663 Cmu-Chr6:27751933 Cmu11g0982 Cmu-Chr11:15107540 6.90E-111 dispersed
Cmu07g0561 Cmu-Chr7:6844854 Cmu11g0982 Cmu-Chr11:15107540 6.70E-106 dispersed
Cmu09g1739 Cmu-Chr9:33422439 Cmu11g0982 Cmu-Chr11:15107540 2.10E-104 dispersed
Cmu09g1886 Cmu-Chr9:34982194 Cmu11g0982 Cmu-Chr11:15107540 3.20E-77 dispersed
Cmu10g1491 Cmu-Chr10:9923702 Cmu11g0982 Cmu-Chr11:15107540 9.90E-67 dispersed
Cmu11g0574 Cmu-Chr11:6332320 Cmu11g0982 Cmu-Chr11:15107540 1.90E-105 dispersed
Cmu11g0982 Cmu-Chr11:15107540 Cmu05g2469 Cmu-Chr5:33667992 4.20E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0982 - - - 0.0