Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0984 ATGCAGAATCATCAACAAATGAACTTGGTTTTGTCTACTGATGCAAAGCCAAGGCTGAAATGGACTTCTGAGCTTCATCAAAGATTTGTTGAGGCTGTCAATCATCTTGGTGGAGCAGATAAGGCCACCCCTAAGAGCTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAGAGCCACTTACAGAAATACAGGTTGGGAAAAAGCCAGCCGTCTGAAACCAATGCCCAACTCAAGCTAGAAGAGATGCAGAGAAAAGGTGGGAATTTTGATGGAGAAGAAAACAAGGATAGAAGTCAAAATCATAACAAAACAGAGAGCATGAAGATATCCGAAGCTCTAGAAATGCAAATGGAAGTACAGAAGAGATTACAAGAGCAAATAGAGGTACAAAGGCATTTACAACTGAGAATCGAAGCACAAGGAAAATATTTAAAGACAGTGTTAAGAAAGGCACAAGAGACAATTGCAGGGTACGGATGTTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTCTCTCAATTGGCTTCAATGGTGAGTTCTGGTTGTCAGAGCTCTTCTTTATCAGAACTGACTGACTCGACAGAACTGAATTTCAAAGGCATTGAAAGAGTAGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACGTCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAGGAAAAGGAAAAAGAACAGAGCAGCTCTGTTTCGGAGGGAGATTGTAAGAGATTAACAATGCATAAAAGTGATGAGGAACACGAGGAATTCAGAATGATCGACTTGAATGATTCTCAATTTGACGATAATACAAGTGGAATTGAATCACAGTTGATTGAGTTCCTTTAA 891 40.4 MQNHQQMNLVLSTDAKPRLKWTSELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQPSETNAQLKLEEMQRKGGNFDGEENKDRSQNHNKTESMKISEALEMQMEVQKRLQEQIEVQRHLQLRIEAQGKYLKTVLRKAQETIAGYGCCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERVGRRMCSIESSLTSSETSEEAPITKKRKGKEKEKEKEQSSSVSEGDCKRLTMHKSDEEHEEFRMIDLNDSQFDDNTSGIESQLIEFL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15202807 15204154 - CmPI595203_11g009840.1 Cmu11g0984 429506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0984 296 NCBIfam myb-like DNA-binding domain, SHAQKYF class 16 71 IPR006447 GO:0003677(InterPro)
Cmu11g0984 296 SUPERFAMILY Homeodomain-like 15 71 IPR009057 -
Cmu11g0984 296 MobiDBLite consensus disorder prediction 229 267 - -
Cmu11g0984 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 73 IPR017930 -
Cmu11g0984 296 FunFam Myb family transcription factor 15 73 - -
Cmu11g0984 296 Gene3D - 15 73 - -
Cmu11g0984 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 3 277 IPR046955 GO:0003700(InterPro)
Cmu11g0984 296 Pfam Myb-like DNA-binding domain 18 69 IPR001005 -
Cmu11g0984 296 MobiDBLite consensus disorder prediction 218 267 - -
Cmu11g0984 296 MobiDBLite consensus disorder prediction 90 109 - -
Cmu11g0984 296 Pfam MYB-CC type transfactor, LHEQLE motif 112 159 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g2179 Cmu-Chr9:37863001 Cmu11g0984 Cmu-Chr11:15202807 9.20E-30 dispersed
Cmu10g2094 Cmu-Chr10:26849092 Cmu11g0984 Cmu-Chr11:15202807 4.80E-39 dispersed
Cmu10g2430 Cmu-Chr10:30721995 Cmu11g0984 Cmu-Chr11:15202807 6.70E-21 dispersed
Cmu11g0258 Cmu-Chr11:3136476 Cmu11g0984 Cmu-Chr11:15202807 4.80E-10 dispersed
Cmu11g0984 Cmu-Chr11:15202807 Cmu11g1648 Cmu-Chr11:28752769 4.60E-13 dispersed
Cmu11g0984 Cmu-Chr11:15202807 Cmu02g1871 Cmu-Chr2:32636481 7.70E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7148 PF00249 Myb_DNA-binding 1.10E-06 CL0123 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0984 - - - 0.0