Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g0993 ATGTTTAACATCGGTTGTCCCCTCATCTTTCGAGATAAAGGGTTCCTCACGGATCGGTACTCTGAAACTGGTGGGCGTCGGGGTTTCAATCGGGCGGTTGGCCTGGAGTGCATTCTAAGCATTGTTAGGGCACTTCGGATGGGGTCCTGCTTGTCTTCGGAGAGCAGGAGCCCCATTCCTGGTTCCCCAACTTCTCCGGCTAAGCATCATCGGAGCAAGAACAGTTCCAAGAGGCGATATGGTTCTAGGAATTCCTCCTTTGGGGATCTCTCACTTCATCGGATCCCCGGCAGGCTCTTCGCTAATGGCTTCACTGATGTCGCGTCTCTGTTCACCCAGCAGGGCAAGAAAGGGACCAATCAGGATGCCATGATTGTTTGGGAGAATTTCGGCTCTAGAACTGATACGATCTTCTGTGGGGTTTTTGATGGCCATGGTCCCTATGGTCATATGGTTGCAAAGAAAGTGAGGGATTCTCTTCCTCTGAGGTTGAGTGCACATTGGGAGGTTAACTTGACCACGGATGATGTTCATAGAGAGATCAATCTTAATACAGGAAGTATGAACTCGGATGAAGCTACTTCCTTTTTATCTGCTGAAGAAGAGTCAAGGGCCTCCACTGATGTTGATGGAACGGAAAAGCAACCTGAAATTTTCCATACTCTGAAGGAGTCATTTCTTAAGGCTTTTAGAGTTATGGACTGGGAACTCAGAATGCACCAAACTATAGATAGCTTCTGTAGTGGGACTACAGCAGTGACTATTGTTAAACAGGGTCAGGATCTTGTCATTGGAAATGTTGGGGACTCCCGAGCTGTTTTGGGTATGAGAGATAAAGATGACTCGCTTGTTGCCATTCAATTGACTGTGGATCTCAAGCCAAATCTTCCAGCTGAAGCAGAGAGAATCCGTAGGTGTAGAGGTCGTGTCTTTGCTCTCCAAGATGAACCTGATGTAGCTCGAGTTTGGCTTCCAAACAGCAACTCTCCTGGACTTGCCATGGCTCGGGCATTTGGAGATTTCTGCCTCAAAGACTTTGGTCTTATCTCTGTACCAGAAATATCATATCGACGGCTCACTGAAAAAGACGAATTCATTGTTCTGGCTACAGATGGAATATGGGATGTTCTGTCAAACAAAGAGGTTGTAGATATTGTTGCATCAGCTCCAAAACGTACTATTGCAGCTCGAACTCTGGTCGAAACTGCCATTAAAGCATGGAAACATAAATACCCAACTTCCAAGATTGATGACTGTGCGGTCGTTTGCCTCTTCCTCGACTCAAACTCCAGCAATCTATCATCTGCTTCCAATACCAAACCGGAAGAGCAACAAAGTTTAACAGAACAAGTCAGCACTGCAGTTGAGAATGAAAATTTCTGTGTCCCAAATGGTCTGAATCGTTCAGGAACTGTCCGAACCACCAGCAAGGAGATTTTGCAGGATGGAAGTGATGAAGAAGAAGATGAATCGAAGGAGGAAGAACATTCAGAAATGGGAATAGAATGGTCTGCCCTGGAAGGAGTGTCGCGCGTAAACACTTTGGTAACCCTGCCAAGATTCGATCCTGGAAAAGAAGATAAGAAAGGGCAGAAGATAAGAAAAGTTATAAAAATTGAAGTTGAGAGAGGTCGGCCCAGCCTTATTAGTGCGTCTGGGGAATTGTTGACACTCTCTTATTACAAGGATGCAGGTTTTGGCAAATCACAACAAGGCTATACGATGGAAGTTATGTCCCTCATTTTGCATTCACAAAATCAATTTGGAGGAAGTGGCTATGTTAGGCTCAATTTTCTAGCAGAGAAAGTATTAGAAGCTATCAGCAAGATTTTCTCTCTACTCTCAAGAGGTGAAGGTGTGTCCAATGATGAACTGCCAACTTTTACTTCAGAGGATCATGCCTCTGTGGCATAG 1914 45.25 MFNIGCPLIFRDKGFLTDRYSETGGRRGFNRAVGLECILSIVRALRMGSCLSSESRSPIPGSPTSPAKHHRSKNSSKRRYGSRNSSFGDLSLHRIPGRLFANGFTDVASLFTQQGKKGTNQDAMIVWENFGSRTDTIFCGVFDGHGPYGHMVAKKVRDSLPLRLSAHWEVNLTTDDVHREINLNTGSMNSDEATSFLSAEEESRASTDVDGTEKQPEIFHTLKESFLKAFRVMDWELRMHQTIDSFCSGTTAVTIVKQGQDLVIGNVGDSRAVLGMRDKDDSLVAIQLTVDLKPNLPAEAERIRRCRGRVFALQDEPDVARVWLPNSNSPGLAMARAFGDFCLKDFGLISVPEISYRRLTEKDEFIVLATDGIWDVLSNKEVVDIVASAPKRTIAARTLVETAIKAWKHKYPTSKIDDCAVVCLFLDSNSSNLSSASNTKPEEQQSLTEQVSTAVENENFCVPNGLNRSGTVRTTSKEILQDGSDEEEDESKEEEHSEMGIEWSALEGVSRVNTLVTLPRFDPGKEDKKGQKIRKVIKIEVERGRPSLISASGELLTLSYYKDAGFGKSQQGYTMEVMSLILHSQNQFGGSGYVRLNFLAEKVLEAISKIFSLLSRGEGVSNDELPTFTSEDHASVA 637
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 15672333 15680205 - CmPI595203_11g009930.1 Cmu11g0993 429515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g0993 637 MobiDBLite consensus disorder prediction 192 212 - -
Cmu11g0993 637 FunFam probable protein phosphatase 2C 33 102 429 - -
Cmu11g0993 637 CDD PP2Cc 107 426 IPR001932 -
Cmu11g0993 637 SMART PP2C_4 98 424 IPR001932 -
Cmu11g0993 637 MobiDBLite consensus disorder prediction 53 85 - -
Cmu11g0993 637 MobiDBLite consensus disorder prediction 466 499 - -
Cmu11g0993 637 SUPERFAMILY PP2C-like 107 427 IPR036457 -
Cmu11g0993 637 PANTHER PROTEIN PHOSPHATASE 79 425 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cmu11g0993 637 Gene3D - 105 428 IPR036457 -
Cmu11g0993 637 Pfam Protein phosphatase 2C 177 405 IPR001932 -
Cmu11g0993 637 MobiDBLite consensus disorder prediction 432 451 - -
Cmu11g0993 637 ProSiteProfiles PPM-type phosphatase domain profile. 107 426 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1517 Cmu-Chr2:28882863 Cmu11g0993 Cmu-Chr11:15672333 1.30E-94 dispersed
Cmu03g1626 Cmu-Chr3:18742968 Cmu11g0993 Cmu-Chr11:15672333 3.10E-145 dispersed
Cmu04g0714 Cmu-Chr4:21501775 Cmu11g0993 Cmu-Chr11:15672333 1.20E-94 dispersed
Cmu06g0475 Cmu-Chr6:5320025 Cmu11g0993 Cmu-Chr11:15672333 3.60E-83 dispersed
Cmu06g0550 Cmu-Chr6:6100029 Cmu11g0993 Cmu-Chr11:15672333 2.20E-26 dispersed
Cmu08g0416 Cmu-Chr8:13435946 Cmu11g0993 Cmu-Chr11:15672333 1.90E-141 dispersed
Cmu10g1190 Cmu-Chr10:4637610 Cmu11g0993 Cmu-Chr11:15672333 3.00E-132 dispersed
Cmu11g0993 Cmu-Chr11:15672333 Cmu11g1788 Cmu-Chr11:29998819 1.30E-17 dispersed
Cmu11g0993 Cmu-Chr11:15672333 Cmu02g1730 Cmu-Chr2:31174190 1.10E-107 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g0993 - - - 0.0