Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1050 ATGGCCACTGTTTCTTGCCAACCTTCCGATTTGGCACCCCTTCTCGGCTCAGCAGCCACCGCGAATTCAACCGCCATAGCCGAGTTCCTATGCTCAAGATTCACTACCATAGCCACCACTTTCAGCTCCACCACCTACGCCGTCGACAACACATACCTCCTCTTCTCCGCCTACCTCGTCTTCGCCATGCAGCTGGGGTTTGCCATGCTTTGTGCTGGCTCGGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTTGACGCCGCTGCCGGTGGCCTCTCCTACTACCTCTTTGGCTTTGCCTTTGCCTTTGGTGCCCCCTCCAACTCCTTCATCGGCAGCCACTTTTTTGGCCTCTCCAATTTCCCAAACCCCTCTACTGATTATAGCTTCTTTCTCTATCAATGGGCTTTTGCTATTGCTGCTGCAGGCATCACCAGTGGTTCCATTGCTGAGCGAACTCAATTTGTTGCCTATCTCATCTATTCTAGCATTCTTACTGGTTTCGTTTATCCCATAGTCTCTCATTGGTTTTGGTCTGCCGACGGGTGGGCTAGCCCAACCCGACCCAGTAACCTTATGTTCAATTCAGGGGCAATCGACTTTGCCGGATCAGGTGTGGTCCACATGGTCGGCGGCATAGCTGGTCTCTGGGGTGCCTTAATCGAAGGCCCTCGGATCGGCCGGTTTGATCGATCTGGCCGTTCTGTAGCCCTTCGCGGCCATAGTGCCTCCTTAGTAGTTCTTGGCTCTTTCCTCCTTTGGTTCGGGTGGTACGGGTTCAACCCAGGTTCATTTCTAACAATCTCCAAATCATACAATGATGGTCGTCCTTACTACGGACAATGGAGCGCCATAGGTCGAACTGGAGTCACCACAACACTAGCTGGATGCACAGCTGCCTTAACAACCCTCTTTACAAAACGCTTATTAGTTGGCCATTGGAACGTAATCGATGTATGCAATGGCCTTTTAGGTGGATTTGCCGCTATCACGTCTGGTTGTGCTGTTGTTGAGCCATGGGCTGCGGTGATATGTGGATTTGTAGCATCCTGGGTGTTAACTGGCTTCAACAAGCTAGCTGAGAAGGTCAGCTACGATGACCCACTAGAGGCGGCACAACTGCATGGCGGGTGTGGGGCATGGGGCTTGATATTCACAGGATTATTTGCAAGAAAGGAGTATGTAGCAGAGGTTTACCAAGCCGGGCGTCCATATGGGTTGTTGATGGGTGGCGGAGGGAGGTTGTTGGCAGCCCAATTGGTGGAGATAATGGCGATAATTGGGTGGGTTTCTGTAACGATGGGGGGATTGTTTTATGGGCTGAAGAAGGTGAAATTGTTGAGAATATCAAGGGAAGATGAGATGGCTGGGATGGATTTGACAAGACATGGAGGCTTTGCTTATGTATATAATGATGAGGAGGATCCGTCTGCAAAGCCATCTGGATTTATGATGAGGAGAATTGAGCCTGCTAATGAAACTCCTCCTCAACAGAATTCTAGTTCAGGGATGGTAGCTGTTTGA 1536 50.59 MATVSCQPSDLAPLLGSAATANSTAIAEFLCSRFTTIATTFSSTTYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFGFAFAFGAPSNSFIGSHFFGLSNFPNPSTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSILTGFVYPIVSHWFWSADGWASPTRPSNLMFNSGAIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRSGRSVALRGHSASLVVLGSFLLWFGWYGFNPGSFLTISKSYNDGRPYYGQWSAIGRTGVTTTLAGCTAALTTLFTKRLLVGHWNVIDVCNGLLGGFAAITSGCAVVEPWAAVICGFVASWVLTGFNKLAEKVSYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVAEVYQAGRPYGLLMGGGGRLLAAQLVEIMAIIGWVSVTMGGLFYGLKKVKLLRISREDEMAGMDLTRHGGFAYVYNDEEDPSAKPSGFMMRRIEPANETPPQQNSSSGMVAV 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 18627852 18630173 + CmPI595203_11g010500.1 Cmu11g1050 429572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1050 511 ProSitePatterns Ammonium transporters signature. 204 229 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu11g1050 511 FunFam Ammonium transporter 30 487 - -
Cmu11g1050 511 Pfam Ammonium Transporter Family 52 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu11g1050 511 PANTHER AMMONIUM TRANSPORTER 19 481 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Cmu11g1050 511 Gene3D Ammonium transporter AmtB like domains 30 487 IPR029020 -
Cmu11g1050 511 NCBIfam ammonium transporter 49 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cmu11g1050 511 SUPERFAMILY Ammonium transporter 46 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g0202 Cmu-Chr7:1930535 Cmu11g1050 Cmu-Chr11:18627852 5.50E-210 dispersed
Cmu11g1050 Cmu-Chr11:18627852 Cmu11g1051 Cmu-Chr11:18764992 2.70E-263 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1050 K03320 - csv:101222356 926.006