Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g1088 | ATGGTTGCCAAGAAAAGGCATACCTTGAAAGATGTGTTGGTACTGGATACTGTTTTTCTTACATATGACATAGTTGCTCTAATTTCAAGTGATATGGGGACAGAGCTTATGAGCGTCTGCGTTGAAGAAGATAGTGATGACTTTCCGTCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTAGGGAAGGTGCACAATCATGAAAAACAAGACAGTTGTGTCCCTGTTAGTTTGCCAACTGTCTCTGAATCACAACCAGTCAAAGTGGGAAGTGAGGTTGAAGGTGGCAATGTTGCAAAAGTTACAAGGTCCCTACGGCGTAAACCATGTGTAAACTATAGACAATATGATTACTGCTCTGATGACGAGATTGATAGTACTAAGTGTCTAGATCAGAATTTTTCTTCAAGGCCTTCTCTTTCAAAGGGAGTCATCCGTGGATGTCCACAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCGTCCAGAAGAATCATGCCGGCCGAACCTTGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCAAGCATACGAGCAAAAGCAGAACCATATGGGATTTGTCGTATTGTTCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACACATTTGGGAGGGGTCTAAATTTGCAACTCGTGTCCAAAGAATTGATAAGCTGCAAAATCGAGATTCAATAAGAAAAAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGAGTAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGCAAAATTGGAGATGCTGGCCCTGTTGAGGCGGAAAGATTTGGATTTGATCCTGGCCCAGATTTTACTTTAGCATTGTTTCAAAAATATGCAGATGACTTTAAGTCTCAGTATTTTAGTAAACCACTCAACGATACTACAAAGGGATGTAATCCATCTATGCTGCAAGAGAACAAACATGAACCATCTTTAGAGGCTATTGAGGGTGAATATTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACTGGAGAGTTTGGCAGCGGCTTTCCAAAGATTTGCTGTCAAGAGGGCTCTACATTGGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTCCTTAGCTATGAGAGTAGCAATATATCTGGAGTCTTGGTACCATGGCTTTATATCGGGATGTGCTTTTCGTCTTTTTGCTGGCACGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGAAAGTTAGAAGAGGCTATGAGAAAACATTTGCCTAACCTCTTTCAAGAACAACCTGATTTACTCCATAAACTGGTTACACAACTTTCTCCGTCCATATTGAAAATGGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTCAATTGTGCAGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTATATCGTGAACAAGGACGAAGAACTACTATTTCCCATGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGAAAATTTAAGATGGAATAATGTTTGTGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTCGAGATGGAGTGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTCGATGCTTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGACTTGCATCTGTCTGCAGTCGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATGCCAAGCAGTTGTGCTCTTGTGCTTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATCAGTGAATTGAACATACTTCTTGAAGCATTGGAGGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTCGGTCTGGCACTCAGTACGTCTAGGGAGTTGAGTTCTCAATCATCAACCAAGTCCCTTGGGAATCCTCAATGGAAAGAATTCTTGAGGCAATCTTCATTATTACCAACTCTAACCGCTTTTGACAGCCCTTCTCATCATGCCAAAAAGTTATCTGAAGTTACTGCTTCCTTTTCAGAAGTTAAGAAGGTAATTTCCACAGTTGATGGATCTGGGAAGGAAATTGAGCAGCAAAATCATCAAATTGAGGTGAAAAAAGAAAACCATGACCTTGTGGCAACCAATTCAAGACATGCAGATTCACAGTCCTGTAAGCAAGATACAAATGCTCTGAATTTAGTAGAAGTGAAAAATACAACGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAGAAGACGATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATCCAGACCGGTTCACTGAGATTGATTCCAAGGCCAGCCTGTGCAACTACGATGAAAATGCCATTTTGCACACTCCCGCGACTGATGCAACGGCCATGGGAGAAAAGGAGGTCAACTTGTTGACTGAAAAAAGATTGAATAGTTGCCAATCGAGCATTGTGGCTTTAAATAGTAAACAGTTTCAAAACATTAACTTATCAGTTAAAGATGCAGCTAATGCTATTCAGAACACCTCAGATGCAGGATTAAGTCATAGTAATAGAGTATTTCCAGCGTCAACAGACACTGATTCTCAAAAACCACAGACATGTGGCTCTGGAAAATTGAATGAGGGTAAGCATGGAAATGTGGGAACAAGTGCTACCTCTTGTGTGTTAGACCCTAGTAGAACTACTGCAAATTTATCTTGCAATCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGGAGGATTAACTGCAATGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGAAAGTCTTGGTCAAACTGTCAGGCCATTTTCCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAGTGTTTTAGATCCGTCAACTTTGTGTTACTATGTTTCTGAAATTCTTGATGCTGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATTGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTTGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGAGTATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACTGAAAGGAACCACGGGGTTGATTCTAGGCCAGCTGGAGTTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAACTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGTGTGTTAGCTCGACTTCTTAACGAAGAGATTCAAAGTCATCGAAGATGA | 3795 | 41.87 | MVAKKRHTLKDVLVLDTVFLTYDIVALISSDMGTELMSVCVEEDSDDFPSVPPGFESYISFSLGKVHNHEKQDSCVPVSLPTVSESQPVKVGSEVEGGNVAKVTRSLRRKPCVNYRQYDYCSDDEIDSTKCLDQNFSSRPSLSKGVIRGCPQCNNCQKVVARWRPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIRAKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFATRVQRIDKLQNRDSIRKNSRVCSQMRRKRRRSNRKGVDVTTLNGKIGDAGPVEAERFGFDPGPDFTLALFQKYADDFKSQYFSKPLNDTTKGCNPSMLQENKHEPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKICCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKMEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLENLRWNNVCGKDGILARAFKTRVEMECARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHAKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSLGNPQWKEFLRQSSLLPTLTAFDSPSHHAKKLSEVTASFSEVKKVISTVDGSGKEIEQQNHQIEVKKENHDLVATNSRHADSQSCKQDTNALNLVEVKNTTDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNPDRFTEIDSKASLCNYDENAILHTPATDATAMGEKEVNLLTEKRLNSCQSSIVALNSKQFQNINLSVKDAANAIQNTSDAGLSHSNRVFPASTDTDSQKPQTCGSGKLNEGKHGNVGTSATSCVLDPSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNCQAIFPKGFKSRVKFISVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGFEMFGFTSPAIVQAIEAMDRNRVCGEYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNHGVDSRPAGVDIVLRGLLKKANLEELNSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR | 1264 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 20008591 | 20020425 | + | CmPI595203_11g010880.1 | Cmu11g1088 | 429610 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g1088 | 1264 | ProSiteProfiles | JmjN domain profile. | 176 | 217 | IPR003349 | - | |
Cmu11g1088 | 1264 | Gene3D | Cupin | 161 | 539 | - | - | |
Cmu11g1088 | 1264 | ProSiteProfiles | FYR domain FYRC motif profile. | 1088 | 1178 | IPR003889 | GO:0005634(InterPro) | |
Cmu11g1088 | 1264 | Pfam | F/Y rich C-terminus | 1090 | 1174 | IPR003889 | GO:0005634(InterPro) | |
Cmu11g1088 | 1264 | SMART | cupin_9 | 389 | 555 | IPR003347 | - | |
Cmu11g1088 | 1264 | FunFam | Putative lysine-specific demethylase JMJ16 | 1034 | 1172 | - | - | |
Cmu11g1088 | 1264 | MobiDBLite | consensus disorder prediction | 1181 | 1210 | - | - | |
Cmu11g1088 | 1264 | ProSiteProfiles | JmjC domain profile. | 389 | 555 | IPR003347 | - | |
Cmu11g1088 | 1264 | MobiDBLite | consensus disorder prediction | 962 | 986 | - | - | |
Cmu11g1088 | 1264 | Gene3D | - | 1036 | 1172 | - | - | |
Cmu11g1088 | 1264 | Pfam | F/Y-rich N-terminus | 1043 | 1085 | IPR003888 | GO:0005634(InterPro) | |
Cmu11g1088 | 1264 | MobiDBLite | consensus disorder prediction | 962 | 978 | - | - | |
Cmu11g1088 | 1264 | SUPERFAMILY | Clavaminate synthase-like | 390 | 582 | - | - | |
Cmu11g1088 | 1264 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 155 | 966 | - | GO:0000785(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0010468(PANTHER)|GO:0032452(PANTHER)|GO:0034647(PANTHER) | |
Cmu11g1088 | 1264 | SMART | fyrn_3 | 1042 | 1086 | IPR003888 | GO:0005634(InterPro) | |
Cmu11g1088 | 1264 | Pfam | jmjN domain | 177 | 210 | IPR003349 | - | |
Cmu11g1088 | 1264 | SMART | JmjN_1 | 175 | 216 | IPR003349 | - | |
Cmu11g1088 | 1264 | Pfam | JmjC domain, hydroxylase | 422 | 538 | IPR003347 | - | |
Cmu11g1088 | 1264 | ProSiteProfiles | FYR domain FYRN motif profile. | 1028 | 1086 | IPR003888 | GO:0005634(InterPro) | |
Cmu11g1088 | 1264 | SMART | fyrc_3 | 1092 | 1186 | IPR003889 | GO:0005634(InterPro) | |
Cmu11g1088 | 1264 | Pfam | C5HC2 zinc finger | 645 | 696 | IPR004198 | - | |
Cmu11g1088 | 1264 | MobiDBLite | consensus disorder prediction | 1182 | 1208 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g0264 | Cmu-Chr1:2649815 | Cmu11g1088 | Cmu-Chr11:20008591 | 5.60E-93 | dispersed | |
Cmu01g0863 | Cmu-Chr1:10395609 | Cmu11g1088 | Cmu-Chr11:20008591 | 8.90E-235 | dispersed | |
Cmu09g0769 | Cmu-Chr9:7309445 | Cmu11g1088 | Cmu-Chr11:20008591 | 2.80E-177 | dispersed | |
Cmu09g1114 | Cmu-Chr9:11515293 | Cmu11g1088 | Cmu-Chr11:20008591 | 2.30E-54 | dispersed | |
Cmu11g1088 | Cmu-Chr11:20008591 | Cmu10g0983 | Cmu-Chr10:1802042 | 4.90E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
7153 | PF02373 | JmjC | 1.80E-44 | CL0029 | Cmu | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g1088 | K11446 | - | csv:101208186 | 2292.69 |