Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1129 ATGGCATCGACTTCCTCGAATTCGCCCTGTGCAGCTTGCAAATTTCTCCGGCGAAAATGCCAACCGGAATGTGTTTTTGCGCCTTATTTTCCGCCGGATCAGCCACAGAAATTCGCCAATGTTCATAAGGTATTCGGAGCCAGCAATGTCACAAAACTTCTCAATGAATTGCATCCTCACCAGAGAGAAGACGCCGTCAATTCGCTCGCCTATGAAGCCGATATGCGTCTTCGAGACCCTGTCTATGGCTGTGTTGGCGTAATTTCTCTGCTCCAACACCAACTCTGTAAACTCCAAATGGATCTCACCTGCGCCAAATCCGAACTCTCCAAATATCAAAACCTAGGCATCGGAAACCACGCCGCCCTGATTTCGCCGCCCTCCACTGTTTCCACCGTCGCTCATGGACAGCGGAACCACCAGCCGGCGTTCAATTTTGCTCGAGATCAACCGCATAGCCTCTATCACGATCAATCTTTTCCTCGAGATCAACAACAGCAACAGATGATGCTCCGACGAAGCTTCGACGGCGGTAGCAACTATGACGGACTTTTGGCTGTCAATGTCACCGCCAGTATCGGCAACCTCAGCCACCAGTTCCAGCAACCTCGCGCCGCCGCCGGAGACGATCGTCGCGGTACTCTCGATCATTCTTAG 657 52.05 MASTSSNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLCKLQMDLTCAKSELSKYQNLGIGNHAALISPPSTVSTVAHGQRNHQPAFNFARDQPHSLYHDQSFPRDQQQQQMMLRRSFDGGSNYDGLLAVNVTASIGNLSHQFQQPRAAAGDDRRGTLDHS 218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21248884 21249540 - CmPI595203_11g011290.1 Cmu11g1129 429651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1129 218 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Cmu11g1129 218 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 155 - -
Cmu11g1129 218 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1297 Cmu-Chr1:25547676 Cmu11g1129 Cmu-Chr11:21248884 7.70E-42 dispersed
Cmu01g2437 Cmu-Chr1:36319110 Cmu11g1129 Cmu-Chr11:21248884 2.00E-31 dispersed
Cmu02g1329 Cmu-Chr2:26716473 Cmu11g1129 Cmu-Chr11:21248884 2.80E-45 dispersed
Cmu06g1772 Cmu-Chr6:28767374 Cmu11g1129 Cmu-Chr11:21248884 8.70E-47 dispersed
Cmu09g1851 Cmu-Chr9:34644362 Cmu11g1129 Cmu-Chr11:21248884 8.00E-44 dispersed
Cmu11g0584 Cmu-Chr11:6419537 Cmu11g1129 Cmu-Chr11:21248884 7.30E-35 dispersed
Cmu11g0609 Cmu-Chr11:6658568 Cmu11g1129 Cmu-Chr11:21248884 1.90E-37 dispersed
Cmu11g1129 Cmu-Chr11:21248884 Cmu10g2152 Cmu-Chr10:27552403 5.10E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7154 PF03195 LOB 4.10E-43 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1129 - - - 0.0