Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g1140 | ATGTTGGAGGGTGGTCAAAAATTCACTGGAATGATCGATTTAAACGAGCATGCATATGATCTATCGCAAGGGTTTTACCATAAACTTGGTGAGGGAACCAACATGTCTATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCAGTTGCCATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAGTCTCATACTCGGATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACCATACTTTTCAACATAGTGTTAACCGCCGCGGAAGAGTTACACATCACCTGAGTGATGATGCACTAGCCCGAGCTTTATTTGATAGTAATACACCCACCCAGGGTCTTGAAAATTTTGAGAAGTGGACACTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGGAAACTCTACAGAGGTACTTATGATGGTGAAGATGTTGCTATCAAGATCTTGGAGAGGCCAGAGAATGACCTGGAAAAGGCTCAGTTAATGGAGCAGCAATATCAGCAGGAGGTGATGATGCTTGCTACACTGAAGCACCCAAATATTGTCCGGTTTATTGGATCATGCCATAAGCCGATGGTTTGGTGCATTGTTACTGAGTATGCGAAGGGCGGTTCAGTTAGGCAGTTCTTGATGAAGCGACAAAGTCGTTCTGTCCCACTGAAATTAGCTGTCAAACAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGGTTGATTCATAGGGACTTGAAATCGGACAACCTTTTGATTTTTGCAGACAAGTCTATCAAAGTTGCTGACTTTGGAGTGGCCCGGATTGAGGTGCAGACAGAAGGAATGACACCTGAGACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTACACCCAAAAGGTGGACCTCTATAGCTTTGGTATCGTTCTGTGGGAGCTCATAACTGGAATGCTTCCATTCCAGAATATGACAGCTGTTCAGGCCGCCTTTGCAGTCGTAAACAAAGGCGTCCGTCCTATCATTCCCAATGATTGCTTACCTGTATTGAGCGACATCATGACCCGGTGCTGGGATGCCAACCCTGATGTTAGGCCGTCATTTACCGAGGTGGTCCGAATGCTTGAGAATGCGCAGACTGAGATCATGACGACAGTTCGTAAGGCTCGTTTCAGGTGTTGCATTACGCAGCCGATGACAACAGACTGA | 1242 | 46.46 | MLEGGQKFTGMIDLNEHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNHTFQHSVNRRGRVTHHLSDDALARALFDSNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHPNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIIPNDCLPVLSDIMTRCWDANPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 21537769 | 21545588 | + | CmPI595203_11g011400.1 | Cmu11g1140 | 429662 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g1140 | 413 | Gene3D | Transferase(Phosphotransferase) domain 1 | 215 | 408 | - | - | |
Cmu11g1140 | 413 | FunFam | Serine/threonine-protein kinase isoform 1 | 122 | 214 | - | - | |
Cmu11g1140 | 413 | SMART | serkin_6 | 132 | 394 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | Pfam | Protein tyrosine and serine/threonine kinase | 133 | 386 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 210 | 223 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 357 | 379 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 248 | 266 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 313 | 335 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | PRINTS | Tyrosine kinase catalytic domain signature | 294 | 304 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | ProSiteProfiles | Protein kinase domain profile. | 132 | 393 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | CDD | STKc_MAP3K-like | 139 | 386 | - | - | |
Cmu11g1140 | 413 | Gene3D | Phosphorylase Kinase; domain 1 | 121 | 214 | - | - | |
Cmu11g1140 | 413 | FunFam | serine/threonine-protein kinase HT1 | 215 | 408 | - | - | |
Cmu11g1140 | 413 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 254 | 266 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1140 | 413 | SUPERFAMILY | Protein kinase-like (PK-like) | 117 | 386 | IPR011009 | - | |
Cmu11g1140 | 413 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 75 | 388 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu01g2250 | Cmu-Chr1:34863101 | Cmu11g1140 | Cmu-Chr11:21537769 | 1.20E-78 | dispersed | |
Cmu03g1410 | Cmu-Chr3:9349319 | Cmu11g1140 | Cmu-Chr11:21537769 | 1.40E-72 | dispersed | |
Cmu06g1786 | Cmu-Chr6:28879435 | Cmu11g1140 | Cmu-Chr11:21537769 | 1.20E-61 | dispersed | |
Cmu10g0888 | Cmu-Chr10:942092 | Cmu11g1140 | Cmu-Chr11:21537769 | 2.70E-70 | dispersed | |
Cmu10g2185 | Cmu-Chr10:27918846 | Cmu11g1140 | Cmu-Chr11:21537769 | 3.70E-60 | dispersed | |
Cmu10g2661 | Cmu-Chr10:33407916 | Cmu11g1140 | Cmu-Chr11:21537769 | 1.70E-45 | dispersed | |
Cmu10g2969 | Cmu-Chr10:35915022 | Cmu11g1140 | Cmu-Chr11:21537769 | 1.30E-64 | dispersed | |
Cmu11g1140 | Cmu-Chr11:21537769 | Cmu11g1465 | Cmu-Chr11:26872969 | 5.00E-42 | dispersed | |
Cmu11g1140 | Cmu-Chr11:21537769 | Cmu01g1266 | Cmu-Chr1:25247538 | 2.30E-79 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75933 | PF07714 | PK_Tyr_Ser-Thr | 2.90E-65 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g1140 | - | - | - | 0.0 |