Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1148 ATGGAAGCCAGCGCTGGACTTGTCGCTGGGTCTCACAATCGTAATGAGCTTGTTGTCATTCATGGCCATGAGGAGCCAAAGCCGTTGAAGAATTTGGACGGTCAAGTTTGTGAGATCTGTGGCGACGAAGTGGGGCTTACTGTGGATGGTGATCTGTTTGTTGCCTGCAATGAATGTGGTTTTCCCGTTTGCAGACCTTGCTATGAGTATGAAAGAAGAGAAGGAAGCCAAAATTGTCCTCAGTGTAAAACTAGATATAAGAGACTCAAAGGGAGTCCGAGGGTTGAGGGAGATGACGATGAAGAAGACATAGATGACCTTGAACATGAGTTCAACATTGATGATGAGAGGAACAACCATAGTCATCTGGCAGAAGCTATGCTTCATGGCAAGATGAGCTACGGTAGAGGCCCAGATGATGAAGAAAATGCACAATACGGAAGAACACAGACAGCAAATGGTGAGCTTCCTTTATCTTCTCAAGGTTATGGAGAGCAGATGTTATCTTCTTCATTGCACAAACGTGTACATCCATATCCAGTTTCTGAACCAGGGAGTACAAGATGGGATGAAAAGAAAGAGGAAGGTTGGAAAGATAGAATGGATGATTGGAAATTGCAGCAAGGCAATCTTGGGCCTGAACCTGATGATGCCAATGACCCTGACATGGCTATGATTGATGCAGCCAGACAACCACTATCAAGGAAGGTACCAATAGCATCAAGCAAAATTAATCCGTACCGGATGGTTATTGTAGCCCGGCTCGTTATTCTCGCCTTCTTCCTTCGATACCGGATTCTAAATCCAGTGCATGACGCATTGGGCTTGTGGCTAACTTCTGTGATATGTGAAATCTGGTTTGCATTTTCATGGATCCTCGATCAGTTCCCCAAATGGTTCCCAATCGATCGTGAAACCTACTTGGATCGTCTATCCCTAAGGTATGAACGAGAGGGTGAACCTAATTTGCTTGCTCCGGTCGACATCTTTGTCAGTACTGTAGATCCGATGAAGGAACCTCCTCTTGTAACAGCTAACACAATCTTATCTATCTTGGCCATGGACTATCCAGTTGACAAGATTTCATGCTACGTTTCGGACGATGGAGCTTCCATGCTTACCTTTGAAGCAATGTCTGAAACTGCAGAATTTGCGAGGAAATGGGTGCCTTTTTGTAAGAAGTTCTCCATAGAACCACGAGCACCTGAAATGTACTTCTGTGAGAAGATTGATTATCTCAAGGATAAAGTCCAACCGACATTTGTGAAAGAGCGTCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGTCAGAATAAATGCTCAAGTAGCGAAAGCCATGAAAGTTCCAGCAGAAGGATGGATAATGCAGGATGGAACACCGTGGCCAGGCAACAACACAAAAGATCATCCTGGTATGATCCAAGTCTTTCTGGGTCACAGTGGAGGCCTCGATGCAGAAGGAAATGAACTCCCCCGCCTAGTTTATGTGTCTCGTGAGAAAAGACCAGGTTTCCAGCATCACAAGAAAGCTGGTGCCATGAATGCCTTGATTCGTGTCTCTGCAGTGCTTACGAATGCTCCATTCATGTTGAACTTGGATTGTGATCACTACATAAACAATAGCAAAGCAGCACGAGAAGCCATGTGCTTCCTTATGGACCCTCAAGTTGGAAAGAAAGTCTGTTATGTACAATTTCCACAAAGATTTGATGGAATAGATAGGCATGATCGTTATGCCAACAGAAACACAGTCTTCTTTGATATTAACATGCGAGGTTTAGATGGAATTCAGGGACCTGTATATGTCGGCACAGGGTGTGTCTTTAGGAGGCAAGCTTTATATGGTTATGAACCCCCAAAAGGTCCTAAGCGCCCAAAAATGGTAAGCTGTGATTGTTGTCCATGCTTTGGACGTCGCAAGAAGCTCAAGCACTCTAAAAGTGGGGTAGATGGAGATGTTGCAGTGCTGGAAGATGATAAGGAGCTACTGATGTCACAAATGAATTTTGAAAAGAAATTTGGACAGTCATCAATTTTTGTTACCTCTACTTTGATGGAAGAAGGTGGTGTTCCGCCCTCCTCGAGTCCAGCAGCCCTGCTTAAGGAAGCAATTCATGTTATCAGTTGTGGTTATGAAGACAAAACCGAATGGGGTACCGAGTTGGGCTGGATTTACGGATCTATCACAGAAGATATTCTAACAGGTTTCAAAATGCATTGTCGTGGCTGGAGATCTATATACTGCATGCCAAAGAGACCTGCATTTAAGGGTACAGCTCCCATCAACTTGTCTGATCGGCTGAACCAGGTGCTTCGGTGGGCACTCGGGTCTATTGAAATCTTTTTCAGCAACCACTGCCCCGTTTGGTATGGTCATAAGGGCGGGAAGCTAAAGTGGCTTGAGAGATTTGCATATGTCAACACAACTGTCTACCCCTTCACTTCAATACCACTTCTCGCCTACTGTACCCTCCCTGCAATCTGCCTGCTCACGGATAAGTTTATCATGCCACCGATAAGCACTTTTGCAAGTCTCTTCTTCATTGCCTTGTTTCTTTCCATTTTTGCTACGGGTATTCTTGAGCTTAAATGGAGTGGAGTAAGCATTGAGGAATGGTGGAGAAATGAGCAGTTCTGGGTCATTGGTGGTATTTCAGCCCATCTATTTGCTGTTGTACAAGGTCTATTGAAGGTATTGGCTGGAATTGATACTAGCTTCACAGTTACATCCAAGGCAACAGATGACGAAGACTTCGGAGAATTATATGCCTTCAAATGGACAACCCTGCTAATCCCTCCAACAACTATTTTGATCATCAACCTTGTAGGGGTTGTTGCAGGCATCTCAGATGCCATAAACAACGGGTATCAATCATGGGGACCTCTATTTGGGAAGCTTTTCTTTGCCTTCTGGGTGATTGTTCATCTCTACCCATTCCTTAAGGGTCTGATGGGCAGACAAAACCGCACACCAACTATAGTCGTCATATGGTCTGTGCTGTTGGCTTCAATCTTCTCCTTGCTTTGGGTCCGAATTGATCCATTTGTGATGAAAACAAAGGGACCTGATACTAAGAAATGTGGACTAAATTGCTGA 3099 44.37 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDEVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDLEHEFNIDDERNNHSHLAEAMLHGKMSYGRGPDDEENAQYGRTQTANGELPLSSQGYGEQMLSSSLHKRVHPYPVSEPGSTRWDEKKEEGWKDRMDDWKLQQGNLGPEPDDANDPDMAMIDAARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRILNPVHDALGLWLTSVICEIWFAFSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNLLAPVDIFVSTVDPMKEPPLVTANTILSILAMDYPVDKISCYVSDDGASMLTFEAMSETAEFARKWVPFCKKFSIEPRAPEMYFCEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINAQVAKAMKVPAEGWIMQDGTPWPGNNTKDHPGMIQVFLGHSGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAAREAMCFLMDPQVGKKVCYVQFPQRFDGIDRHDRYANRNTVFFDINMRGLDGIQGPVYVGTGCVFRRQALYGYEPPKGPKRPKMVSCDCCPCFGRRKKLKHSKSGVDGDVAVLEDDKELLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGTELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSNHCPVWYGHKGGKLKWLERFAYVNTTVYPFTSIPLLAYCTLPAICLLTDKFIMPPISTFASLFFIALFLSIFATGILELKWSGVSIEEWWRNEQFWVIGGISAHLFAVVQGLLKVLAGIDTSFTVTSKATDDEDFGELYAFKWTTLLIPPTTILIINLVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVMKTKGPDTKKCGLNC 1032
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21710662 21715093 - CmPI595203_11g011480.1 Cmu11g1148 429670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1148 1032 CDD mRING-HC-C4C4_CesA 35 85 - -
Cmu11g1148 1032 Pfam Zinc-binding RING-finger 27 103 IPR027934 -
Cmu11g1148 1032 FunFam Cellulose synthase 444 618 - -
Cmu11g1148 1032 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 432 618 IPR029044 -
Cmu11g1148 1032 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Cmu11g1148 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Cmu11g1148 1032 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 233 1001 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Cmu11g1148 1032 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 856 IPR029044 -
Cmu11g1148 1032 Pfam Cellulose synthase 327 1026 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Cmu11g1148 1032 SUPERFAMILY RING/U-box 21 109 - -
Cmu11g1148 1032 FunFam Cellulose synthase 19 110 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g0906 Cmu-Chr2:11815683 Cmu11g1148 Cmu-Chr11:21710662 4.10E-119 dispersed
Cmu02g0907 Cmu-Chr2:11888643 Cmu11g1148 Cmu-Chr11:21710662 9.40E-116 dispersed
Cmu06g0144 Cmu-Chr6:1453475 Cmu11g1148 Cmu-Chr11:21710662 0.00E+00 dispersed
Cmu08g0200 Cmu-Chr8:4217416 Cmu11g1148 Cmu-Chr11:21710662 0.00E+00 dispersed
Cmu09g0397 Cmu-Chr9:3817256 Cmu11g1148 Cmu-Chr11:21710662 0.00E+00 dispersed
Cmu09g2039 Cmu-Chr9:36468043 Cmu11g1148 Cmu-Chr11:21710662 8.40E-109 dispersed
Cmu09g2040 Cmu-Chr9:36474918 Cmu11g1148 Cmu-Chr11:21710662 3.30E-105 dispersed
Cmu10g1890 Cmu-Chr10:24199752 Cmu11g1148 Cmu-Chr11:21710662 3.10E-246 dispersed
Cmu10g1891 Cmu-Chr10:24213169 Cmu11g1148 Cmu-Chr11:21710662 1.30E-214 dispersed
Cmu11g1148 Cmu-Chr11:21710662 Cmu02g0903 Cmu-Chr2:11686605 2.60E-116 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1148 K10999 - csv:101214842 2097.78