Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1149 ATGGCGGCCAAAACTGAAGGCAAAGCCATTGGCATCGACCTTGGCACCACCTACAGCTGTGTCGGGGTTTGGCTCAACGATCGTGTTGAAATTATCCCCAATGATCAAGGTAACCGAACCACTCCTTCTTATGTAGCTTTCACCGACACTGAGCGTTTGATCGGCGATGCGGCTAAGAATCAGGTCGCTATGAATCCTCAGAATACCGTTTTCGACGCCAAGCGGTTGATCGGCCGACGACTCTCTGATCCCTCTGTTCAGAGCGATATGAAGCTTTGGCCATTCAAAGTGGTGGCTGGACCTGGAGACAAGCCGATGATTATTGTTAATTACAAAGGTGAAGAGAAGCAGTTTGCTCCGGAGGAGATCTCTTCTATGGTTTTGACTAAGATGAAAGAAATCGCGGAAGCTTTTCTGGGGCAAACTATCAAGAACGCGGTAATTACAGTCCCTGCTTATTTCAACGATTCACAGAGACAAGCGACGAAAGATGCAGGTGCTATTGCTGGACTCAACGTGATGCGTATCATCAACGAGCCAACGGCGGCGGCGATTGCGTATGGTCTGGACAAAAAGGCGTCTCGTAGAGGTGAACAGAACGTGCTGATCTTCGACCTCGGCGGTGGAACTTTCGATGTGTCGCTCTTGACAATAGAAGAGGGAATTTTCGAGGTCAAAGCCACTGCCGGCGATACTCATCTCGGCGGTGAAGATTTTGACAACAGACTCGTAAATCATTTCGTTACAGAATTCAAACGGAAGAACAAGAAAGATATCAGCGGCAATGCGAGGGCGTTGAGGAGGTTGAGGACGGCCTGCGAACGAGCGAAAAGAGCCCTATCATCGACGACGCAAACGACAATTGAAGTTGATTCCCTTTACGAAGGGATTGATTTCTATGCGACAATAACTAGGGCTAGATTTGAGGAACTGTGTATGGATATGTTCATGAAGTGCATGGAGCCTGTGGAGAAATGTATCCGAGATGCTAAAATTGATAAAAGCCAAGTTCATGAGGTGGTTTTGGTTGGTGGATCCACAAGAATTCCGAAAGTTCAGCAGCTTCTCCAAGATTACTTCAATGGAAAGGAGCTGTGCAAAAGTATCAACCCGGATGAGGCCGTTGCTTATGGTGCTGCTGTTCAGGCTGCAATTCTAAGTGGGGAAGGAGACGAGAAGGTTCAAGATCTTCTACTCCTGGACGTCACACCTCTGAGTCTGGGTCTAGAGACGGCGGGCGGGGTGATGACAGTTCTAATTCCAAGGAACACAACAATCCCAACAAAGAAAGAACAAATATTCTCAACATACTCAGACAACCAACCGGGAGTTTTAATCCAAGTATACGAAGGAGAGCGAGCAAGAACCAAAGACAACAACCTACTGGGAAAATTCGAGCTCACCGGCATTCCTCCAGCACCAAGAGGCGTCCCGCAGATCAATGTGGTGTTCGACATCGACGCCAACGGCATCCTAAACGTATCGGCAGAGGACAAAACTGCAGGAGTAAAGAACAAGATCACAATCACCAACGACAAGGGGAGAATGAGCAAAGACGAGATAGAGAGGCTGGTGAAAGAAGCAGAGAAGTACAAAGCAGAAGATGAGGAAGTGAAGAAGAAAGTTGAGGCTAAGAATGCATTGGAGAATTACGCGTATAATATGAGGAATACTGTTAGGGATGAGAAATTTGCGGGGAAGCTGAATCCAGAAGATAAGCAGAAGATTGAGAAATCTGTTGAAGATACAATTGAGTGGTTGGATAGGAACCAACTGGCGGAGGTTGATGAGCTTGAAGATAAGCTGAAGGAGCTCGAGGGTATCTGTAATCCCATCATTGCCAAGATGTATCAGGGCGGTGCTCCCATGGGCGATGATATGCCTGGCGGCGGCTCCGCCCAGTCCGGGGGTGCTGGGCCGAAGATTGAGGAGGTTGATTGA 1941 48.02 MAAKTEGKAIGIDLGTTYSCVGVWLNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPQNTVFDAKRLIGRRLSDPSVQSDMKLWPFKVVAGPGDKPMIIVNYKGEEKQFAPEEISSMVLTKMKEIAEAFLGQTIKNAVITVPAYFNDSQRQATKDAGAIAGLNVMRIINEPTAAAIAYGLDKKASRRGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKNKKDISGNARALRRLRTACERAKRALSSTTQTTIEVDSLYEGIDFYATITRARFEELCMDMFMKCMEPVEKCIRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDYFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVVFDIDANGILNVSAEDKTAGVKNKITITNDKGRMSKDEIERLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTVRDEKFAGKLNPEDKQKIEKSVEDTIEWLDRNQLAEVDELEDKLKELEGICNPIIAKMYQGGAPMGDDMPGGGSAQSGGAGPKIEEVD 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 21717913 21720138 - CmPI595203_11g011490.1 Cmu11g1149 429671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1149 646 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 623 IPR029048 -
Cmu11g1149 646 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 369 389 - -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 58 66 - -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 396 415 - -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 337 353 - -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 209 219 - -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 36 48 - -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 146 166 - -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 8 21 - -
Cmu11g1149 646 PRINTS 70kDa heat shock protein signature 477 493 - -
Cmu11g1149 646 Gene3D - 192 366 - -
Cmu11g1149 646 FunFam Heat shock protein 70 10 196 - -
Cmu11g1149 646 Gene3D - 10 384 - -
Cmu11g1149 646 MobiDBLite consensus disorder prediction 619 646 - -
Cmu11g1149 646 Coils Coil 266 286 - -
Cmu11g1149 646 Coils Coil 588 608 - -
Cmu11g1149 646 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cmu11g1149 646 Gene3D - 545 619 IPR029048 -
Cmu11g1149 646 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cmu11g1149 646 FunFam Heat shock 70 kDa protein 197 264 - -
Cmu11g1149 646 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cmu11g1149 646 Coils Coil 514 545 - -
Cmu11g1149 646 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Cmu11g1149 646 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Cmu11g1149 646 SUPERFAMILY Actin-like ATPase domain 197 388 IPR043129 -
Cmu11g1149 646 PANTHER HEAT SHOCK PROTEIN 70KDA 9 580 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Cmu11g1149 646 FunFam Heat shock protein 70 546 619 - -
Cmu11g1149 646 FunFam Heat shock 70 kDa 235 318 - -
Cmu11g1149 646 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cmu11g1149 646 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Cmu11g1149 646 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cmu11g1149 646 FunFam Heat shock 70 kDa 391 545 - -
Cmu11g1149 646 Gene3D Actin; Chain A, domain 4 235 318 - -
Cmu11g1149 646 Gene3D - 71 126 - -
Cmu11g1149 646 FunFam Heat shock 70 kDa protein 71 126 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu09g1908 Cmu-Chr9:35153369 Cmu11g1149 Cmu-Chr11:21717913 0.00E+00 dispersed
Cmu10g1767 Cmu-Chr10:21780823 Cmu11g1149 Cmu-Chr11:21717913 1.00E-156 dispersed
Cmu11g1149 Cmu-Chr11:21717913 Cmu11g1671 Cmu-Chr11:28956797 3.30E-56 dispersed
Cmu11g1149 Cmu-Chr11:21717913 Cmu09g1914 Cmu-Chr9:35190628 0.00E+00 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1149 K03283 - csv:101215564 1184.47