Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1159 ATGAAGACGCCGGCGAACGGTGCCGCCGGTGCCGCCGCCGCGCCTAATTCCAACGAAGGTGGATTGGAGAAGAAGATCATAAATCCGGAGTTATGGCAAGCGTGCGCCGGTCCACTGGTGAACCTGCCGCCGGCCGGTTACCACGTGGTGTATTTTCCTCAAGGCCACAGCGAACAGGTTGCAGCATCTTTGAGGAAAGATGTGGATGGCCAAGTCCCAAACTACCCAAATCTTCCTTCTAAGTTACTATGTTTGCTTCATAATGTAACATTACATGCTGACCCAGAAACAGATGAAGTATATGCTCAAATGACCCTACTGCCAGTTCCTTCTTTTGACAAGGATGCATTGTTGAGATCAGATCTAGCTCTCAAGTCTAATAAGCCTCAACCAGAGTTCTTCTGTAAAACATTGACTGCAAGTGACACGAGCACTCATGGCGGGTTCTCCGTGCCTCGCCGTGCTGCAGAGAAGATCTTCCCCCCTCTTGATTTCTCCATGCAACCCCCTGCACAAGAGCTTGTTGCTAAAGATTTGCATGATAATGTATGGACTTTCCGTCACATATATCGAGGGCAACCCAAACGCCATTTGCTAACAACTGGTTGGAGCTTATTTGTTAGTGGAAAGAGACTTCTTGCTGGCGATTCAGTTTTGTTCATAAGAGATGAAAAACAACAGCTTCTATTGGGCATTAGACGAGCTAACAGGCAACCAACAAACTTATCATCATCAGTGTTGTCAAGTGATAGTATGCATATTGGTATTCTTGCAGCTGCTGCCCATGCTGCTGCAAACAATAGCCCTTTCACTGTCTTCTACAACCCGAGGGCAAGTCCTTCAGAATTTGTCATTCCTCTTGCCAAATATTACAAGGCAGTGTCGGCAAACCAAATATCACTTGGAATGCGCTTCAGAATGATGTTCGAAACTGAAGAGTCTGGAACTAGAAGGTATATGGGCACTATTACTGGTATAAGTGATCTTGATCCTGTCCGATGGAAGGGCTCACAATGGCGTAATCTACAGGTTGGGTGGGATGAGTCGACTGGAGGAGAAAGAAGAAATCGAGTCTCCATATGGGAGATTGAGCCTGTTATTGCTCCATTTTTCATTTGCCCCTCTCCATTTTTGAGATCTAAACGACCGAGGCAACCGGGAATGCCAGATGATGACTCCTCCGATTTGGATGGTATATTTAAAAGAACAATGTTTGGTGACGATTTTTGCATGAAAGATCCACAAGGATATCCTGGCCTAAACTTAGTTCAATGGATGAATATGCAAAATCCATCACTTTCAAATTCAATGCAGCCAAATTATATGCATTCGTTTTCCGGGTCTATGCTTCCAAACCTTGGTGGAGTTGATATTTCTCGGCAACTTGGTTTGTCAAGTGCACAAATTCCTCAATCAAACAACATACAGTTCAATGCACAAAGGCTACTTTCTCAGGCTCAACAGTTAGATCAGCTACCTAAGCTACCGTCAAGTATGAACTCGTTGGGATCCGTAGTGCAGGCACCGCAACAGTTGGATGATATGTCTCAGCAGACCCGACAGAATTTGATTAACCAAAACGCAGTCTCGAGTCAGATTCAGGCTCAAATAATGCAGCAGCCTCACACTACTGGGATCCTACAGCAGCAAACTGCTTTGCAAAACCCGCAGCTTCAGAGAAATGTCCCTCAGAATCTGCAAATGCAGCAGCATCAGCAAATTTTAGGTCAAAATCAACAACAGACTATGAATCAGTCCCCGCTCCCGGAACAGTTAAATCATCAGTTACAAATGTCGGATAATCAGGTTCAAATGCAGATGTTGCAGAAGTTTCAACAGCAGCAGCAGCAATCAATTTTGGCTCAGCAGTCTGCTCTTCAGCCTGCTCAACTCACCCAACTACCGGAGCAGCAGAGACAGTCAGTGGATGCGTCCCAAAGCTTTTCTAGGTCCATGTCAACTAACCAAATGCTCGACATTCCTCAATCCACCCCAGTTGCAGGCCCTCCATCAAATGCGTTACCGCAGCAGACAGCAAATTGCAATAGCCAGACGAATAATCGATTCTCAAATCAGCATTTGCAACCGAAACTTCCACAACTACAGCAACCACCTCCATCTACTGTACTTTCCGATATGTCTAGGCCAATGGGACTTCCTCCTACCCAAACGAATAATCAGCTCTCTGCAGCTACTAGTAGTTTAATAACAGGAGCAGCAGGGGCTGGTCAATCTGGAATCACTGATGACATACCATCTTGCTCCACGTCACCTTCCACGAACAATTGTCCAAGTTTGGTTCAACCGGTAGCCAATGGAAGGGTTCATCGAACCACAGGATTGGTTGAGGATGTTGCTCAATCAGCTGCAACAATATTCAGTTCAAATACATTGGATACCATGTCACCAAATGCCAACTTAGTGCATAAAGATTTGCCACAGAAGACTGCTGTTAAACCTTCACTGAATATTTCCAAGAATCAAAGCCATGGAATTTTTGCACAACAAACTTTCTTGAGTGGTGTTGTTGCTCAGACGGATTTCTTAGACACGTCATCCTCCACGACCTCAGCTTGCCTTTCTCAGAATGATGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAACTCACAGCCAATGTTATTTAAAGATAGTACTCAGGATTTGGAGGTACCGACAGATCTCCATAACATTCCGTACGGGGCTCATGTCGATGGACAAATGGTAACACAGTTAAATTCTGATCCTTTGTTAGACAAAGGCATTGGAGGTTTGGGGAAAGATTTCTCCAATAATTTTTCTTCTGGGGCCATGCTCACCACCTACGATGTACAGAAAGATCCTCAACAGGAAATTTCTTCCTCTATAGTTTCCCAATCATTTGGTATTCCAGACATGACATTTAATTCCATGGATTCAACAATTAACGATAACGCCTTCTTGAATAGAAACCAATGGGCTCCTCCACCTCCGTTCCAACGTATGCGAACCTACACCAAGGTTTACAAACGTGGAGCTGTTGGGAGATCTATTGATATCACCCGATACTCGGGTTATGATGAGCTTAAACAAGACCTTGCCCGTAGGTTTGGTATCGAGGGACAATTGGAGGACAGGCAAAAAATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGACGTTTTACTCGTAGGCGACGACCCTTGGGAGGACTTTGTGAACTGTGTACGGAGCATCAAGATCCTTTCCCCACAGGAAGTCCAACAAATGAGCTTGGATGGAGATTTCAGCAACGGGCTCAAAGTTCATAGTGTCGAATATCAGTACGGCTACGATTTCCTGTTGCAAGAGTCTTGCAGCAATGAAGGAGATATAGCCAACAACACTCAGCAATGGCTTTTAGCCATTCCCTGGTTAAATTTTCTGGACCTCTTAGCTTAG 3423 44.81 MKTPANGAAGAAAAPNSNEGGLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLRKDVDGQVPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLLPVPSFDKDALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQELVAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVIAPFFICPSPFLRSKRPRQPGMPDDDSSDLDGIFKRTMFGDDFCMKDPQGYPGLNLVQWMNMQNPSLSNSMQPNYMHSFSGSMLPNLGGVDISRQLGLSSAQIPQSNNIQFNAQRLLSQAQQLDQLPKLPSSMNSLGSVVQAPQQLDDMSQQTRQNLINQNAVSSQIQAQIMQQPHTTGILQQQTALQNPQLQRNVPQNLQMQQHQQILGQNQQQTMNQSPLPEQLNHQLQMSDNQVQMQMLQKFQQQQQQSILAQQSALQPAQLTQLPEQQRQSVDASQSFSRSMSTNQMLDIPQSTPVAGPPSNALPQQTANCNSQTNNRFSNQHLQPKLPQLQQPPPSTVLSDMSRPMGLPPTQTNNQLSAATSSLITGAAGAGQSGITDDIPSCSTSPSTNNCPSLVQPVANGRVHRTTGLVEDVAQSAATIFSSNTLDTMSPNANLVHKDLPQKTAVKPSLNISKNQSHGIFAQQTFLSGVVAQTDFLDTSSSTTSACLSQNDAQLQQNNMMSFNSQPMLFKDSTQDLEVPTDLHNIPYGAHVDGQMVTQLNSDPLLDKGIGGLGKDFSNNFSSGAMLTTYDVQKDPQQEISSSIVSQSFGIPDMTFNSMDSTINDNAFLNRNQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKQDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFSNGLKVHSVEYQYGYDFLLQESCSNEGDIANNTQQWLLAIPWLNFLDLLA 1140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22023493 22030987 - CmPI595203_11g011590.1 Cmu11g1159 429681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1159 1140 Gene3D - 298 368 - -
Cmu11g1159 1140 Pfam B3 DNA binding domain 134 236 IPR003340 GO:0003677(InterPro)
Cmu11g1159 1140 MobiDBLite consensus disorder prediction 631 690 - -
Cmu11g1159 1140 FunFam Auxin response factor 298 369 - -
Cmu11g1159 1140 SUPERFAMILY DNA-binding pseudobarrel domain 123 263 IPR015300 -
Cmu11g1159 1140 Pfam Auxin response factor 260 343 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu11g1159 1140 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677(InterPro)
Cmu11g1159 1140 FunFam Auxin response factor 132 236 - -
Cmu11g1159 1140 Gene3D - 992 1085 - -
Cmu11g1159 1140 SUPERFAMILY CAD & PB1 domains 1009 1075 - -
Cmu11g1159 1140 FunFam Auxin response factor 991 1085 - -
Cmu11g1159 1140 MobiDBLite consensus disorder prediction 1 20 - -
Cmu11g1159 1140 Gene3D - 132 235 IPR015300 -
Cmu11g1159 1140 Pfam AUX/IAA family 994 1081 IPR033389 -
Cmu11g1159 1140 ProSiteProfiles PB1 domain profile. 996 1081 IPR053793 -
Cmu11g1159 1140 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 27 1087 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cmu11g1159 1140 CDD B3_DNA 133 225 IPR003340 GO:0003677(InterPro)
Cmu11g1159 1140 SMART B3_2 134 236 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu11g0026 Cmu-Chr11:729583 Cmu11g1159 Cmu-Chr11:22023493 3.10E-17 dispersed
Cmu11g0133 Cmu-Chr11:1891703 Cmu11g1159 Cmu-Chr11:22023493 2.50E-245 dispersed
Cmu11g1159 Cmu-Chr11:22023493 Cmu01g2432 Cmu-Chr1:36248281 3.10E-166 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7156 PF02309 AUX_IAA 2.30E-07 CL0072 Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1159 - - - 0.0