Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1182 ATGGAGAACATTCTGGACGAGTATGGGTATTACTGGGAAACGAATATGTTTCTGCAGACGCAAGAGTTCGACAGTTGGGGATTGGATGAAGCATTTTACGGTTCTTACGATTCGAGCTCGCCCGACGGAACGCTGTCGTCGTTAGAGGCATCCAAGAACATCTTATCGGAGAGGAATCGGAGGAAGAAGCTCAACGATAGGCTTCTTGCTCTCAGAGCTGTGGTCCCTAATATCACCAAGATGGACAAGGCGTCGATAATAAAAGACGCGATCGAGTACATCCAAGAGCTGCGAGCGCAAGAAAAGAGAATCGAATCGGAGATTTCAGATCTGGAAGGCAAAATCGAGAACAGAACAACAAATGAAGAAGACGACGACCATAATGGCAGTGGAAACTCCAGAAAGAGAACGAACGATTATAATCGACAAGTACGAGAGAAGCCATCCTCAATCCCGATCGAAATTCTCGATTTGAGCGTGAATTACATGGGAGAGAAGACGATGGTAGTGAGTTTGACGTGCGGAAGAAGAAGCGATGCGGTACTGAAAGTTAGTCAAGTAATTGAATCGCTGAAGCTTAAGATTATTACGGCCAATATCATCGTTGTTGCCAACAGAGTTATGAATACGCTCTTCCTTGAGGCAGAGAGAGCAGAGGAAGAGGAACTTAAGGTAAAAATAGAAAGAGCCATTGCAGCAATTAGTGATCAACAAAGCCCTACGAGCATTTGA 732 44.95 MENILDEYGYYWETNMFLQTQEFDSWGLDEAFYGSYDSSSPDGTLSSLEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELRAQEKRIESEISDLEGKIENRTTNEEDDDHNGSGNSRKRTNDYNRQVREKPSSIPIEILDLSVNYMGEKTMVVSLTCGRRSDAVLKVSQVIESLKLKIITANIIVVANRVMNTLFLEAERAEEEELKVKIERAIAAISDQQSPTSI 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 22833513 22841506 - CmPI595203_11g011820.1 Cmu11g1182 429704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1182 243 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
Cmu11g1182 243 MobiDBLite consensus disorder prediction 110 145 - -
Cmu11g1182 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
Cmu11g1182 243 Coils Coil 213 233 - -
Cmu11g1182 243 Gene3D - 47 114 IPR036638 GO:0046983(InterPro)
Cmu11g1182 243 Coils Coil 87 114 - -
Cmu11g1182 243 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 49 224 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cmu11g1182 243 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
Cmu11g1182 243 MobiDBLite consensus disorder prediction 110 143 - -
Cmu11g1182 243 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Cmu11g1182 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 114 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g2587 Cmu-Chr5:34575696 Cmu11g1182 Cmu-Chr11:22833513 1.00E-17 dispersed
Cmu08g1128 Cmu-Chr8:23637418 Cmu11g1182 Cmu-Chr11:22833513 2.60E-12 dispersed
Cmu10g1010 Cmu-Chr10:2101974 Cmu11g1182 Cmu-Chr11:22833513 3.30E-11 dispersed
Cmu11g1040 Cmu-Chr11:18304111 Cmu11g1182 Cmu-Chr11:22833513 1.90E-10 dispersed
Cmu11g1182 Cmu-Chr11:22833513 Cmu11g1484 Cmu-Chr11:27146309 1.90E-12 dispersed
Cmu02g2150 Cmu-Chr2:35112660 Cmu11g1182 Cmu-Chr11:22833513 3.10E-17 transposed
Cmu11g1182 Cmu-Chr11:22833513 Cmu06g1431 Cmu-Chr6:25553118 1.60E-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7157 PF00010 HLH 7.30E-11 No_clan Cmu TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1182 - - - 0.0