Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1213 ATGGGAAACGACACCGCTTTAACTCTCGAAGAGATCAAGAACGAGACTGTTGATCTGGAGAAAATTCCTATTGAAGAAGTGTTTGAGCAGCTGAAATGTACAAGAGAAGGTTTAAGTTCTCAAGAAGGGGAGAACCGTCTTCAAATCTTTGGTCCCAACAAGCTAGAAGAGAAAAAGGAAAGCAAGATTCTGAAGTTTCTTGGGTTTATGTGGAATCCTCTTTCTTGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCCTTGGCCAACGGTGGCGGCCGGGGACCGGATTGGCAGGACTTTGTCGGTATTGTCTGTCTGTTGGTTATCAACTCCACCATCAGTTTCATTGAAGAGAACAATGCTGGTAATGCAGCAGCTGCTCTTATGGCTGGTCTTGCACCTAAGACTAAGGTTCTAAGGGATGGAAAATGGTGTGAACAAGATGCATCAATTCTAGTACCAGGCGATGTGATCAGTGTGAAATTGGGAGACATCATCCCGGCCGACGCTCGTCTTCTCGAGGGTGATCCATTAAAGGTTGATCAATCCGCCTTAACTGGAGAATCACTTCCTGTAACCAAGAATCCAGGGGATGAAGTTTTCTCTGGCTCAACTTGCAAACAAGGAGAAATTGAAGCTGTTGTTATTGCTACTGGTGTCCACACCTTCTTTGGAAAAGCAGCTCATCTTGTTGATAGCACTAACCAAGTTGGACACTTCCAAAAGGTTCTCACTGCCATTGGGAACTTCTGTATTTGCTCCATTGCCATTGGTATGTTGATTGAGATCCTCGTCATGTACCCAATCCAACACCGTGCCTACAGAGACGGAATTGACAACCTTTTGGTTCTCTTGATTGGAGGCATTCCAATTGCTATGCCTACTGTCTTGTCTGTGACTATGGCTATTGGTTCTCACAAGCTGTCCCAACAAGGTGCTATCACCAAGAGAATGACTGCTATCGAAGAAATGGCCGGTATGGACGTTCTTTGCAGTGACAAAACCGGAACGCTGACTCTTAACAAGTTGAGTGTTGACAAGAACTTGATTGAGGTATTTGCCAAGGGCGTAGACAAAGAACATGTCATTCTTCTTGCTGCAAGAGCTTCTAGGACTGAAAACCAGGATGCAATTGATGCTGCCATGGTTGGAATGCTCGCTGACCCGAAAGAGGCAAGAGCTGGAATTAGAGAAATTCACTTCTTCCCATTTAACCCTGTGGATAAGAGAACTGCTTTGACTTACATTGATTCCAATGGAAACTGGCACCGTGCTAGCAAAGGTGCTCCCGAACAGATCTTGACTCTTTGCAACTGCAAAGAAGACTTCAAGAGGAAGGTGTTTTCTGTTATTGACAAGTTTGCCGAGCGTGGACTTCGATCGTTGGCTGTTGCTAGACAGGAAGTGCCTGAGAAGACTAAGGAGAGTCCTGGTGCACCATGGCAATTTGTTGGTTTGTTGCCCCTTTTCGATCCTCCTAGACATGATAGTGCAGAAACTATTCGCAGGGCTCTCAACTTGGGTGTGAATGTCAAGATGATTACTGGTGATCAACTTGCTATTGCAAAGGAAACCGGTCGAAGACTTGGAATGGGAACAAATATGTATCCATCTTCTTCCTTACTTGGCCAGCACAAGGACGAAAGCATTGCTGGACTTCCAGTTGAAGAGTTGATTGAGAAGGCTGATGGATTTGCTGGAGTGTTTCCAGAACACAAGTATGAAATCGTAAAGAAGTTGCAAGAGAGAAAGCACATTTGTGGAATGACAGGAGATGGTGTGAATGATGCTCCTGCTTTGAAGAAGGCAGACATTGGTATTGCTGTTGCTGATGCTACTGATGCAGCAAGAAGTGCGTCCGACATTGTCCTTACTGAGCCTGGTTTGAGTGTTATCATCAGCGCCGTGTTGACCAGCAGGGCAATCTTCCAGAGGATGAAGAACTATACTATCTATGCAGTTTCCATCACTATTCGTATTGTGTTTGGTTTCATGTTGATTGCCCTCATCTGGAAGTTTGATTTCTCTCCCTTCATGGTTTTGATTATTGCTATCCTGAATGATGGTACAATTATGACAATCTCAAAGGACAGGGTGAAGCCATCTCCATTACCTGACAGTTGGAAACTGAAGGAGATTTTTGCAACTGGAGTAGTACTTGGAGGATACTTGGCATTGATGACGGTTATATTCTTTTGGTTAATGGACGGAACGGACTTCTTTTCTGATAAATTCGGTGTAAGATCGATCCGTGGTAATGAAGATGAAAAGATGGCTGCATTGTACCTTCAAGTGAGTATTGTCAGCCAGGCTTTGATTTTTGTAACTAGATCGCGCGGCTGGTCGTATGTTGAGCGACCTGGACTTCTATTAGTGGGCGCTTTCTTGGTTGCACAACTGGTTGCAACTTTGATCGCGGTATATGCAAACTGGGGATTTGCAAAGATCAAGGGAATCGGATGGGGATGGGCCGGTGTCATCTGGCTGTACAGCATTGTTTTCTACATTCCACTCGATATCATGAAGTTTGCTATTCGATACATATTGAGCGGAAAGGCATGGCTAAACTTGTTAGAAAACAAGACTGCTTTCACCACCAAGAAAGACTATGGAAAAGAGGAAAGAGAAGCTCAATGGGCCCTTGCTCAAAGGACATTACATGGACTTCAACCACCCGAGTCGACAAACATCTTCTCCGAAAAGAGCAGCTACAGAGAACTCTCCGAGATCGCAGAGCAAGCCAAGAGACGTGCTGAGATTGCAAGGCTCCGAGAGCTCAACACACTCAAAGGACACGTTGAGTCGGTGGTGAAGTTGAAGGGACTCGACATCGACACCATCCAACAACACTACACAGTGTGA 2865 45.13 MGNDTALTLEEIKNETVDLEKIPIEEVFEQLKCTREGLSSQEGENRLQIFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGRGPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGKWCEQDASILVPGDVISVKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKNPGDEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMLIEILVMYPIQHRAYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGVDKEHVILLAARASRTENQDAIDAAMVGMLADPKEARAGIREIHFFPFNPVDKRTALTYIDSNGNWHRASKGAPEQILTLCNCKEDFKRKVFSVIDKFAERGLRSLAVARQEVPEKTKESPGAPWQFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQHKDESIAGLPVEELIEKADGFAGVFPEHKYEIVKKLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWLMDGTDFFSDKFGVRSIRGNEDEKMAALYLQVSIVSQALIFVTRSRGWSYVERPGLLLVGAFLVAQLVATLIAVYANWGFAKIKGIGWGWAGVIWLYSIVFYIPLDIMKFAIRYILSGKAWLNLLENKTAFTTKKDYGKEEREAQWALAQRTLHGLQPPESTNIFSEKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTIQQHYTV 954
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 23652328 23658261 - CmPI595203_11g012130.1 Cmu11g1213 429735
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1213 954 PANTHER CALCIUM-TRANSPORTING ATPASE 20 878 - GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER)
Cmu11g1213 954 CDD P-type_ATPase_H 37 844 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cmu11g1213 954 SUPERFAMILY HAD-like 328 638 IPR036412 -
Cmu11g1213 954 Gene3D - 97 818 - -
Cmu11g1213 954 PRINTS H+-transporting ATPase (proton pump) signature 448 466 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu11g1213 954 PRINTS H+-transporting ATPase (proton pump) signature 591 607 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu11g1213 954 PRINTS H+-transporting ATPase (proton pump) signature 563 579 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu11g1213 954 PRINTS H+-transporting ATPase (proton pump) signature 622 647 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu11g1213 954 PRINTS H+-transporting ATPase (proton pump) signature 763 784 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu11g1213 954 SMART Cation_ATPase_N_a_2 18 90 IPR004014 -
Cmu11g1213 954 PRINTS P-type cation-transporting ATPase superfamily signature 486 497 - -
Cmu11g1213 954 PRINTS P-type cation-transporting ATPase superfamily signature 614 626 - -
Cmu11g1213 954 PRINTS P-type cation-transporting ATPase superfamily signature 591 610 - -
Cmu11g1213 954 PRINTS P-type cation-transporting ATPase superfamily signature 508 518 - -
Cmu11g1213 954 PRINTS P-type cation-transporting ATPase superfamily signature 182 196 - -
Cmu11g1213 954 PRINTS P-type cation-transporting ATPase superfamily signature 332 346 - -
Cmu11g1213 954 Pfam haloacid dehalogenase-like hydrolase 328 605 - -
Cmu11g1213 954 FunFam ATPase 4 plasma membrane-type 576 818 - -
Cmu11g1213 954 SFLD C1.7: P-type atpase like 314 642 - -
Cmu11g1213 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 334 340 IPR018303 -
Cmu11g1213 954 NCBIfam HAD-IC family P-type ATPase 566 679 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu11g1213 954 NCBIfam HAD-IC family P-type ATPase 104 351 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cmu11g1213 954 SFLD p-type atpase 314 642 IPR044492 -
Cmu11g1213 954 SUPERFAMILY Calcium ATPase, transduction domain A 135 232 IPR008250 -
Cmu11g1213 954 Gene3D - 135 219 - -
Cmu11g1213 954 FunFam Plasma membrane ATPase 135 219 - -
Cmu11g1213 954 Gene3D - 903 954 - -
Cmu11g1213 954 Gene3D - 344 491 IPR023299 GO:0000166(InterPro)
Cmu11g1213 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 18 850 IPR023298 -
Cmu11g1213 954 Pfam E1-E2 ATPase 134 311 - -
Cmu11g1213 954 NCBIfam plasma-membrane proton-efflux P-type ATPase 37 809 IPR006534 GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro)
Cmu11g1213 954 FunFam Plasma membrane ATPase 484 639 - -
Cmu11g1213 954 Coils Coil 905 925 - -
Cmu11g1213 954 FunFam Plasma membrane ATPase 344 491 - -
Cmu11g1213 954 Pfam Cation transporter/ATPase, N-terminus 21 84 IPR004014 -
Cmu11g1213 954 Gene3D - 329 628 IPR023214 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu01g1400 Cmu-Chr1:27530587 Cmu11g1213 Cmu-Chr11:23652328 0.00E+00 dispersed
Cmu05g1792 Cmu-Chr5:28050821 Cmu11g1213 Cmu-Chr11:23652328 0.00E+00 dispersed
Cmu08g1205 Cmu-Chr8:24458733 Cmu11g1213 Cmu-Chr11:23652328 0.00E+00 dispersed
Cmu09g1767 Cmu-Chr9:33784238 Cmu11g1213 Cmu-Chr11:23652328 0.00E+00 dispersed
Cmu11g1166 Cmu-Chr11:22254297 Cmu11g1213 Cmu-Chr11:23652328 4.60E-42 dispersed
Cmu11g1213 Cmu-Chr11:23652328 Cmu02g0828 Cmu-Chr2:9783723 3.20E-07 dispersed
Cmu07g1222 Cmu-Chr7:27527392 Cmu11g1213 Cmu-Chr11:23652328 0.00E+00 transposed
Cmu11g0350 Cmu-Chr11:3978025 Cmu11g1213 Cmu-Chr11:23652328 0.00E+00 transposed
Cmu11g1213 Cmu-Chr11:23652328 Cmu06g1412 Cmu-Chr6:25307334 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1213 K01535 - csv:101221564 1805.42