Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1262 ATGAACAATCGCCAAACTTCTCATTCCAAAATCGAGTATCTAATTAAGAAGATATATCCTCCTACGCTACCTGGGTACAAAGGAGTTTTCCCTTTGGCCGATTTCCCTTCTCTTTCCTTCCCTCCGCCTTCGACAATCGACACCGTCATCTCCGTTCTTCAGTTCTTCCTCCTCTCAATCTTCTCATCTTCCTCACCTCACCGTTTGCTGCTTTCTTCCCTCACCGTCGATCTCCCTCCACTCCGTCGATCACCCTCACGCCGTTTCTCTAATTCCACTCCATCGATCTCCCTCACGCCGCCTCTCTCCTCCACTCCCTCGATTTCCACTGGCAGTGTGTCCAAACTCCCAAGGGCCTCAGGCTTAGCTATTCATCACTGTAAGGATGTTTTTTTGATTCCTTATGATGTGCAAATGGATTTGGGGAAACAGAAGAATTTGATGGATAGCCCTTTGACGCGGAGCTCTACCCCTAATTCCTCACCTATCTCAAATCCTGGTTCAAATGATGAAAGCCCACGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACGAGGATTGTGAGTGTTCAGAGGGATATTACATATGAGGAGTTAATGATTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAGCAACCAGATGAGGATCCTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGTGACGGGTTCACTAGGCTGAGGATATTCTTGTTTTCACATCCTGAACAAGATGGTTCTTTGCCCTTTGTGGATGGCGATGAGAGGGATACTGAAAGGCGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAGCTAAATTCCCCTGCAATTAGTGGCATAGATGATATGCACGGGAATGAACATTTTTTGAACCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACAATATCATCTGCATCAGCTCACAATCCCCCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCCCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTCCTTTCACCGAGGCATCATGGTCCATATGATTCAAGAACGATGGGTGAATATCCATCTTCTCCATTTGCACGATACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAGCAAATGAATCACCAACATATGTATGAACATCAACCACAATATAACGAGAATATTGTATGGCTGCCAAATGGAACAACTAGTGAAGAGTCAGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCTAGATGGGAATAGTTCTTGTGAACACTGTCGGGCAAATTTTCATCGGTATCAAACACACATGGAACAAGCTAATACGATAAATGGACTTCCCCCTGAATACCCTCAGAATAGAGAGGCCTTGATGCAGAAGGCAGACATGAAGTTCCATCATGGTATTTTTCCAAATGAGCAGAATATTAACGATCATCGATCTAGTTATAATGAGACACCACCCCATGAGAAAGGATGGATTATGCAACAACAGGTGAGTGTGCGAGGGGATGACACGAGAACACATGTTTCTGGGGCTGGACGATTGAATGATCACTACATTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCATGCTTCCACAAATTTTCATGATGAGGGATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCAGAAGATCGTGGTGTTGGTTATATGCCTTATGGATATGGAGGAGATCCTCATTATCCTCCAATGGCACAAAGGCATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCCACTTATGAAGCATCTGTTTTCCTTCAACAAGGGAATGCGAGCATAAATCCAGGATATATCAAAGCCATGCAGGATGGTAGTCCACGAATTCATATCGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAACAAAAAATTTTGGGTATTGAGGGTGCAACTGGTTCAGAGCATTTACCTGGACATGTTTTGAAGACTAACTCGACCGCGGTTGGCCATGACAATCAACACTTAACAAGTTTAGAACATATCCAACCACATCTAGATAAGATAAACCTTGTTGCTTCTCCTATGCAGAGGTCAGATTCATCTTCACCATTTATTCATGAAAAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCGCAACCGAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAGTTGTGCATGGGGAAGGAAATGGACACATGATTAACGATACGGGGAAAGTTGACATCTCTGAAGCACACATTGTTTCTCATCCCGGTCAAAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCGTTAAATTCAACTTGCATGAACTCTGCAGTAGAAAATGGTGATGGGCTGAAACCTTCTGCAGAGACTCTTGAAAAGCCTAAACTATCAGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGCAAAGAGCAGCACTAGAAGTATCTGAAGAGGCAATGGTTGAAGAAACCGCTCAAAGGGGTCCTGATTCAATAGGAAAAAAAGAGACAACAAATGAGCAACATTCCTCGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACAATCAAAGCTCTGAAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTACCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGGGAACGTTTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGACGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATCGATCGCCGTAAGAGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTATGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTAGTGTCAGGAGGGGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCTATAATTGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATTCCGACATGGTGCGATCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATAGACTGCATTGCTGGGAGACTACAAGTACAGATATGAAGGAGATCCACGTAGGCATTGGGAATGATTTCACTTGGGATTCTGCCGTTGGAAGCGTACGCCAAACAGTAATGATACAATACATATATATGTTGGTTCTGCTATAA 3891 43.18 MNNRQTSHSKIEYLIKKIYPPTLPGYKGVFPLADFPSLSFPPPSTIDTVISVLQFFLLSIFSSSSPHRLLLSSLTVDLPPLRRSPSRRFSNSTPSISLTPPLSSTPSISTGSVSKLPRASGLAIHHCKDVFLIPYDVQMDLGKQKNLMDSPLTRSSTPNSSPISNPGSNDESPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDITYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQLNSPAISGIDDMHGNEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPAFLSPRHHGPYDSRTMGEYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTTSEESGFPGNILHGHGVLDGNSSCEHCRANFHRYQTHMEQANTINGLPPEYPQNREALMQKADMKFHHGIFPNEQNINDHRSSYNETPPHEKGWIMQQQVSVRGDDTRTHVSGAGRLNDHYIVDGSGSNFPPTQSNITDGYHASTNFHDEGFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGDPHYPPMAQRHMPGNASWRNVQNPLHVAPTYEASVFLQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQQKILGIEGATGSEHLPGHVLKTNSTAVGHDNQHLTSLEHIQPHLDKINLVASPMQRSDSSSPFIHEKKMVAPFHPSQNPQPRAVSVVNEAMMMERKVVHGEGNGHMINDTGKVDISEAHIVSHPGQNNTDDTYSKVAPLESLNSTCMNSAVENGDGLKPSAETLEKPKLSVSRLSFLPELIASVQRAALEVSEEAMVEETAQRGPDSIGKKETTNEQHSSNAHGEPELETESDNQSSEIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNRLHCWETTSTDMKEIHVGIGNDFTWDSAVGSVRQTVMIQYIYMLVLL 1296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24628751 24641555 - CmPI595203_11g012620.1 Cmu11g1262 429784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1262 1296 SUPERFAMILY Protein kinase-like (PK-like) 965 1239 IPR011009 -
Cmu11g1262 1296 MobiDBLite consensus disorder prediction 85 110 - -
Cmu11g1262 1296 MobiDBLite consensus disorder prediction 912 972 - -
Cmu11g1262 1296 SUPERFAMILY CAD & PB1 domains 191 279 - -
Cmu11g1262 1296 PANTHER SERINE-THREONINE PROTEIN KINASE 153 1245 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cmu11g1262 1296 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 971 1065 - -
Cmu11g1262 1296 Gene3D Phosphorylase Kinase; domain 1 964 1064 - -
Cmu11g1262 1296 MobiDBLite consensus disorder prediction 147 172 - -
Cmu11g1262 1296 Pfam PB1 domain 190 274 IPR000270 GO:0005515(InterPro)
Cmu11g1262 1296 CDD PB1_UP2 178 274 - -
Cmu11g1262 1296 Pfam Protein tyrosine and serine/threonine kinase 980 1241 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1262 1296 SMART serkin_6 978 1247 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cmu11g1262 1296 SMART PB1_new 189 274 IPR000270 GO:0005515(InterPro)
Cmu11g1262 1296 CDD STKc_MAP3K-like 984 1241 - -
Cmu11g1262 1296 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1066 1257 - -
Cmu11g1262 1296 Gene3D Transferase(Phosphotransferase) domain 1 1065 1270 - -
Cmu11g1262 1296 MobiDBLite consensus disorder prediction 148 171 - -
Cmu11g1262 1296 MobiDBLite consensus disorder prediction 83 110 - -
Cmu11g1262 1296 ProSitePatterns Protein kinases ATP-binding region signature. 984 1005 IPR017441 GO:0005524(InterPro)
Cmu11g1262 1296 PRINTS Tyrosine kinase catalytic domain signature 1212 1234 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1262 1296 PRINTS Tyrosine kinase catalytic domain signature 1168 1190 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1262 1296 PRINTS Tyrosine kinase catalytic domain signature 1097 1115 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1262 1296 PRINTS Tyrosine kinase catalytic domain signature 1060 1073 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1262 1296 Gene3D - 193 276 - -
Cmu11g1262 1296 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 194 276 - -
Cmu11g1262 1296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1103 1115 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cmu11g1262 1296 ProSiteProfiles Protein kinase domain profile. 978 1255 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu05g0382 Cmu-Chr5:3242110 Cmu11g1262 Cmu-Chr11:24628751 1.70E-143 dispersed
Cmu06g1257 Cmu-Chr6:23742284 Cmu11g1262 Cmu-Chr11:24628751 5.90E-138 dispersed
Cmu10g1516 Cmu-Chr10:10340476 Cmu11g1262 Cmu-Chr11:24628751 8.10E-30 dispersed
Cmu11g0946 Cmu-Chr11:13072683 Cmu11g1262 Cmu-Chr11:24628751 2.50E-06 dispersed
Cmu11g1262 Cmu-Chr11:24628751 Cmu11g1465 Cmu-Chr11:26872969 8.60E-48 dispersed
Cmu11g1262 Cmu-Chr11:24628751 Cmu03g1027 Cmu-Chr3:4825541 1.70E-141 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75938 PF07714 PK_Tyr_Ser-Thr 1.20E-61 CL0016 Cmu PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1262 - - - 0.0