Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmu11g1262 | ATGAACAATCGCCAAACTTCTCATTCCAAAATCGAGTATCTAATTAAGAAGATATATCCTCCTACGCTACCTGGGTACAAAGGAGTTTTCCCTTTGGCCGATTTCCCTTCTCTTTCCTTCCCTCCGCCTTCGACAATCGACACCGTCATCTCCGTTCTTCAGTTCTTCCTCCTCTCAATCTTCTCATCTTCCTCACCTCACCGTTTGCTGCTTTCTTCCCTCACCGTCGATCTCCCTCCACTCCGTCGATCACCCTCACGCCGTTTCTCTAATTCCACTCCATCGATCTCCCTCACGCCGCCTCTCTCCTCCACTCCCTCGATTTCCACTGGCAGTGTGTCCAAACTCCCAAGGGCCTCAGGCTTAGCTATTCATCACTGTAAGGATGTTTTTTTGATTCCTTATGATGTGCAAATGGATTTGGGGAAACAGAAGAATTTGATGGATAGCCCTTTGACGCGGAGCTCTACCCCTAATTCCTCACCTATCTCAAATCCTGGTTCAAATGATGAAAGCCCACGTGTTAAATTCCTGTGCAGCTTCTTGGGAAGTATAATGCCTCGCCCCCAAGATGGCAAGCTTCGGTATGTTGGGGGAGAGACGAGGATTGTGAGTGTTCAGAGGGATATTACATATGAGGAGTTAATGATTAAGATGAGGGAACTTTATGATGGGGCTGCAGTGTTGAAGTACCAGCAACCAGATGAGGATCCTGATGCTCTTGTGTCTGTTGTCAATGATGATGATGTGATTAACATGATGGAAGAGTATGATAAGGTGGGTTCTGGTGACGGGTTCACTAGGCTGAGGATATTCTTGTTTTCACATCCTGAACAAGATGGTTCTTTGCCCTTTGTGGATGGCGATGAGAGGGATACTGAAAGGCGATATGTAGATGCTCTTAATAATTCAAATGACATGAATGATTTTGTTAGACAACAACAGCTAAATTCCCCTGCAATTAGTGGCATAGATGATATGCACGGGAATGAACATTTTTTGAACCCAATGAATATTGAAGGTAGTCTTCACACTCAGAGGAGTTGTGAGCCCTTGTCACAATATCATCTGCATCAGCTCACAATCCCCCATGTTGGGTCTGGGGGGCAACAACAATCTGTGGCCCAAAGGTATAGTGAAATGGAAGCTCCATGGAGTCCTGCTTTCCTTTCACCGAGGCATCATGGTCCATATGATTCAAGAACGATGGGTGAATATCCATCTTCTCCATTTGCACGATACCGTATGCCATTCCCAGATTTGCCAGATAAATATTTGGAAAGAATGCCTGAAGACTATGTCAGGCAGCAAATGAATCACCAACATATGTATGAACATCAACCACAATATAACGAGAATATTGTATGGCTGCCAAATGGAACAACTAGTGAAGAGTCAGGTTTCCCAGGTAATATATTACATGGACATGGTGTTCTAGATGGGAATAGTTCTTGTGAACACTGTCGGGCAAATTTTCATCGGTATCAAACACACATGGAACAAGCTAATACGATAAATGGACTTCCCCCTGAATACCCTCAGAATAGAGAGGCCTTGATGCAGAAGGCAGACATGAAGTTCCATCATGGTATTTTTCCAAATGAGCAGAATATTAACGATCATCGATCTAGTTATAATGAGACACCACCCCATGAGAAAGGATGGATTATGCAACAACAGGTGAGTGTGCGAGGGGATGACACGAGAACACATGTTTCTGGGGCTGGACGATTGAATGATCACTACATTGTGGATGGTTCTGGCTCAAATTTTCCTCCTACACAAAGTAATATAACTGATGGCTACCATGCTTCCACAAATTTTCATGATGAGGGATTTCGTGATCAGGTTGTGCCTAGTGGGCAACATATGTGTGTTCCTCCTCCAGAAGATCGTGGTGTTGGTTATATGCCTTATGGATATGGAGGAGATCCTCATTATCCTCCAATGGCACAAAGGCATATGCCTGGAAATGCCTCTTGGCGAAATGTTCAGAATCCATTACATGTTGCTCCCACTTATGAAGCATCTGTTTTCCTTCAACAAGGGAATGCGAGCATAAATCCAGGATATATCAAAGCCATGCAGGATGGTAGTCCACGAATTCATATCGGTATGGACCACCAAAATCCTTGGCATGAATCCTCACAACAAAAAATTTTGGGTATTGAGGGTGCAACTGGTTCAGAGCATTTACCTGGACATGTTTTGAAGACTAACTCGACCGCGGTTGGCCATGACAATCAACACTTAACAAGTTTAGAACATATCCAACCACATCTAGATAAGATAAACCTTGTTGCTTCTCCTATGCAGAGGTCAGATTCATCTTCACCATTTATTCATGAAAAAAAAATGGTTGCACCTTTTCATCCTAGCCAAAATCCGCAACCGAGGGCTGTTAGTGTGGTTAATGAAGCTATGATGATGGAAAGAAAAGTTGTGCATGGGGAAGGAAATGGACACATGATTAACGATACGGGGAAAGTTGACATCTCTGAAGCACACATTGTTTCTCATCCCGGTCAAAATAACACTGATGATACATATTCCAAGGTTGCACCCCTTGAATCGTTAAATTCAACTTGCATGAACTCTGCAGTAGAAAATGGTGATGGGCTGAAACCTTCTGCAGAGACTCTTGAAAAGCCTAAACTATCAGTCAGCCGTCTGAGTTTCTTACCTGAGTTGATTGCATCTGTGCAAAGAGCAGCACTAGAAGTATCTGAAGAGGCAATGGTTGAAGAAACCGCTCAAAGGGGTCCTGATTCAATAGGAAAAAAAGAGACAACAAATGAGCAACATTCCTCGAATGCCCATGGGGAACCTGAGTTGGAAACTGAGAGTGACAATCAAAGCTCTGAAATTGAGCCAACAAAAGCTGAAGAGGAAGCCATTTCAAGAGGATTACAAACAATTAAAAATGATGATCTGGAGGAGATTCGTGAACTAGGGTCTGGGACTTATGGTGCTGTTTACCATGGGAAATGGAGAGGTTCTGATGTTGCAATAAAGAGGATCAAAGCTAGCTGTTTTGCTGGACGGCCTTCGGAAAGGGAACGTTTGATTGCAGATTTTTGGAAGGAAGCTTTGATATTAAGTTCTTTACACCATCCAAATGTTGTTTCCTTCTATGGTATTGTTCGTGACGGTCCTGATGGTTCCTTAGCAACAGTGACAGAATTCATGGTTAATGGATCATTGAAGCAGTTTTTGCACAAGAAGGACAGGACCATCGATCGCCGTAAGAGACTCATTATAGCTATGGATGCTGCATTTGGGATGGAATATTTGCATGGGAAGAATATTGTACATTTTGATTTGAAATGCGAAAACCTTTTAGTGAATATGAGAGACCCTCAGAGGCCTGTATGCAAGATTGGTGATTTGGGATTGTCAAAGGTGAGACAACACACGTTAGTGTCAGGAGGGGTTCGTGGAACTTTGCCCTGGATGGCACCGGAGCTTCTTAGTGGGAAAAGTAACATGGTGACAGAGAAGATCGATGTTTACTCATTTGGGATTGTTATGTGGGAACTACTCACAGGAGATGAACCATATTCAGATATGCATTGTGCTTCTATAATTGGAGGAATTGTGAACAATTGTTTACGCCCTGAAATTCCGACATGGTGCGATCCAGAATGGAAGGCTTTAATGTCAAGCTGTTGGGACTCGGACCCAGCTAAGAGACCATCATTTTCAGAAATTTCTCAGAAGCTAAGGAATATGGCAGCTGCAATGAATAGACTGCATTGCTGGGAGACTACAAGTACAGATATGAAGGAGATCCACGTAGGCATTGGGAATGATTTCACTTGGGATTCTGCCGTTGGAAGCGTACGCCAAACAGTAATGATACAATACATATATATGTTGGTTCTGCTATAA | 3891 | 43.18 | MNNRQTSHSKIEYLIKKIYPPTLPGYKGVFPLADFPSLSFPPPSTIDTVISVLQFFLLSIFSSSSPHRLLLSSLTVDLPPLRRSPSRRFSNSTPSISLTPPLSSTPSISTGSVSKLPRASGLAIHHCKDVFLIPYDVQMDLGKQKNLMDSPLTRSSTPNSSPISNPGSNDESPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVQRDITYEELMIKMRELYDGAAVLKYQQPDEDPDALVSVVNDDDVINMMEEYDKVGSGDGFTRLRIFLFSHPEQDGSLPFVDGDERDTERRYVDALNNSNDMNDFVRQQQLNSPAISGIDDMHGNEHFLNPMNIEGSLHTQRSCEPLSQYHLHQLTIPHVGSGGQQQSVAQRYSEMEAPWSPAFLSPRHHGPYDSRTMGEYPSSPFARYRMPFPDLPDKYLERMPEDYVRQQMNHQHMYEHQPQYNENIVWLPNGTTSEESGFPGNILHGHGVLDGNSSCEHCRANFHRYQTHMEQANTINGLPPEYPQNREALMQKADMKFHHGIFPNEQNINDHRSSYNETPPHEKGWIMQQQVSVRGDDTRTHVSGAGRLNDHYIVDGSGSNFPPTQSNITDGYHASTNFHDEGFRDQVVPSGQHMCVPPPEDRGVGYMPYGYGGDPHYPPMAQRHMPGNASWRNVQNPLHVAPTYEASVFLQQGNASINPGYIKAMQDGSPRIHIGMDHQNPWHESSQQKILGIEGATGSEHLPGHVLKTNSTAVGHDNQHLTSLEHIQPHLDKINLVASPMQRSDSSSPFIHEKKMVAPFHPSQNPQPRAVSVVNEAMMMERKVVHGEGNGHMINDTGKVDISEAHIVSHPGQNNTDDTYSKVAPLESLNSTCMNSAVENGDGLKPSAETLEKPKLSVSRLSFLPELIASVQRAALEVSEEAMVEETAQRGPDSIGKKETTNEQHSSNAHGEPELETESDNQSSEIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWRGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMVNGSLKQFLHKKDRTIDRRKRLIIAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWELLTGDEPYSDMHCASIIGGIVNNCLRPEIPTWCDPEWKALMSSCWDSDPAKRPSFSEISQKLRNMAAAMNRLHCWETTSTDMKEIHVGIGNDFTWDSAVGSVRQTVMIQYIYMLVLL | 1296 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 24628751 | 24641555 | - | CmPI595203_11g012620.1 | Cmu11g1262 | 429784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmu11g1262 | 1296 | SUPERFAMILY | Protein kinase-like (PK-like) | 965 | 1239 | IPR011009 | - | |
Cmu11g1262 | 1296 | MobiDBLite | consensus disorder prediction | 85 | 110 | - | - | |
Cmu11g1262 | 1296 | MobiDBLite | consensus disorder prediction | 912 | 972 | - | - | |
Cmu11g1262 | 1296 | SUPERFAMILY | CAD & PB1 domains | 191 | 279 | - | - | |
Cmu11g1262 | 1296 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 153 | 1245 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cmu11g1262 | 1296 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 971 | 1065 | - | - | |
Cmu11g1262 | 1296 | Gene3D | Phosphorylase Kinase; domain 1 | 964 | 1064 | - | - | |
Cmu11g1262 | 1296 | MobiDBLite | consensus disorder prediction | 147 | 172 | - | - | |
Cmu11g1262 | 1296 | Pfam | PB1 domain | 190 | 274 | IPR000270 | GO:0005515(InterPro) | |
Cmu11g1262 | 1296 | CDD | PB1_UP2 | 178 | 274 | - | - | |
Cmu11g1262 | 1296 | Pfam | Protein tyrosine and serine/threonine kinase | 980 | 1241 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1262 | 1296 | SMART | serkin_6 | 978 | 1247 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cmu11g1262 | 1296 | SMART | PB1_new | 189 | 274 | IPR000270 | GO:0005515(InterPro) | |
Cmu11g1262 | 1296 | CDD | STKc_MAP3K-like | 984 | 1241 | - | - | |
Cmu11g1262 | 1296 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 1066 | 1257 | - | - | |
Cmu11g1262 | 1296 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1065 | 1270 | - | - | |
Cmu11g1262 | 1296 | MobiDBLite | consensus disorder prediction | 148 | 171 | - | - | |
Cmu11g1262 | 1296 | MobiDBLite | consensus disorder prediction | 83 | 110 | - | - | |
Cmu11g1262 | 1296 | ProSitePatterns | Protein kinases ATP-binding region signature. | 984 | 1005 | IPR017441 | GO:0005524(InterPro) | |
Cmu11g1262 | 1296 | PRINTS | Tyrosine kinase catalytic domain signature | 1212 | 1234 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1262 | 1296 | PRINTS | Tyrosine kinase catalytic domain signature | 1168 | 1190 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1262 | 1296 | PRINTS | Tyrosine kinase catalytic domain signature | 1097 | 1115 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1262 | 1296 | PRINTS | Tyrosine kinase catalytic domain signature | 1060 | 1073 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1262 | 1296 | Gene3D | - | 193 | 276 | - | - | |
Cmu11g1262 | 1296 | FunFam | Octicosapeptide/phox/Bem1p domain kinase superfamily protein | 194 | 276 | - | - | |
Cmu11g1262 | 1296 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1103 | 1115 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cmu11g1262 | 1296 | ProSiteProfiles | Protein kinase domain profile. | 978 | 1255 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmu05g0382 | Cmu-Chr5:3242110 | Cmu11g1262 | Cmu-Chr11:24628751 | 1.70E-143 | dispersed | |
Cmu06g1257 | Cmu-Chr6:23742284 | Cmu11g1262 | Cmu-Chr11:24628751 | 5.90E-138 | dispersed | |
Cmu10g1516 | Cmu-Chr10:10340476 | Cmu11g1262 | Cmu-Chr11:24628751 | 8.10E-30 | dispersed | |
Cmu11g0946 | Cmu-Chr11:13072683 | Cmu11g1262 | Cmu-Chr11:24628751 | 2.50E-06 | dispersed | |
Cmu11g1262 | Cmu-Chr11:24628751 | Cmu11g1465 | Cmu-Chr11:26872969 | 8.60E-48 | dispersed | |
Cmu11g1262 | Cmu-Chr11:24628751 | Cmu03g1027 | Cmu-Chr3:4825541 | 1.70E-141 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75938 | PF07714 | PK_Tyr_Ser-Thr | 1.20E-61 | CL0016 | Cmu | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmu11g1262 | - | - | - | 0.0 |