Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1269 ATGGAACATGAACTAATGAACGGCCAAGATTTCATCTTCCGATCAAAGCTCCCAGACATATACATCCCAAACCACCTCCCTCTCCACACCTATTGCTTTGAACACCTCTCCCAATTCCAGCACCGCCCTTGCCTCATCAACGGCGCCACCGGCGAGGTCCACACCTACGCCGCGGTCGACCTAGCAGCCAGACGTGTCGCTGCCGGGCTGAGCAAGATCGGCGTTGGACAAGGCGACGTCATAATGCTCGTGCTCCAAAACAGCCCCGAGTTCGTGTTTGCGTTCCTCGGCGCGTCGTTCGCCGGTGCAATTAGCACCACGGCGAACCCGCTGTACAAGCCAGGGGAGATTGCGAGGCAGGCGGCAACGGCGAGGGCGAAGGTAATAATTACGCAGGCGGAGTTTGTGGAGAAGGTTAGGGGATTTGCTGTGGAAAATGGGGTGAAGATATTGTGTACGGATTCCCCGCCGGCGGGTTGTTTGAGATTCTCGGAGGTTATGGAGGCGGATGAAAATGAGATTCCGGCGGTGAAGATTAATTCAAATGATGTTGTTGCTCTTCCTTTTTCGTCTGGAACTACTGGAATTCCTAAAGGGGTTATGTTAACGCATAAATCTCTTGTTACAAGCGTTGCTCAACAGGTGGATGGAGAGAATCCAAATGTAAACTTGAATAGCAACGATGTGATTATATGTGTTCTTCCATTATTCCATATCTATTCTCTCAACTCCGTTCTCCTCTGTGGACTACGTGTCGGCGCTGCCATTCTCATCCTCCAAAAATACGACATGTCGTCCCTTCTTCACCTCATTCAAACCCACAAGGCCACAATTGCTCCATTCGTTCCTCCCATCGTCTTGGACTTCGCCAAAAACCCCGACATCCAACGTTACGACTTGTCGTCCATCAGAATCGTCATGTCGGGCGCGGCGCCTATGGGGAAGGACCTTGAGGATACCGTCAAAGCTAGGCTCCCCAATGCCACGCTCGGACAGGGGTATGGAATGACTGAGGCAGGGCCAGTGCTATCTATGTGTTTGGCGTTTGCAAAGGAACCTTTCAAGGTTAAATCAGGTGCGTGCGGGACCGTCGTAAGGAATGCTGAGATGAAGATCATACACCCTGACACTTCCGTATCTTTGCCACGTAATCACCCTGGTTATCTCAACAACAAAGAAGCAACAGAGAAGACTATAGACAAAGACGGATGGCTCCACACAGGAGACTTAGGGTTCATCGACGATAACGACGAGATCTTCATCGTCGACCGATTGAAGGAACTGATCAAATACAAGGGATATCAAGTTGCCCCAGCAGAGCTTGAAGCTCTCTTGACTTCAAACCCTAACATTTCTGCAGCTGCTGTCATACCTATGGAAGACGAAGCAGCAGGAGAGATCCCTGTTGCATTTGTTGTTAGATCTAATGGTTCCAAGATTAGTGAAAATGATATCAAAAAATATATTTCGGATCAGGTTATATATTACAAAAAAATCAGAAAGGTTTTGTTTGTGGACTCAATTCCAATTGCCCCTTCAGGCAAGATATTGAGGAAGGTTTTAAAAGCTCAGTTAGAGGCTGGTGCCTTTTAA 1593 48.65 MEHELMNGQDFIFRSKLPDIYIPNHLPLHTYCFEHLSQFQHRPCLINGATGEVHTYAAVDLAARRVAAGLSKIGVGQGDVIMLVLQNSPEFVFAFLGASFAGAISTTANPLYKPGEIARQAATARAKVIITQAEFVEKVRGFAVENGVKILCTDSPPAGCLRFSEVMEADENEIPAVKINSNDVVALPFSSGTTGIPKGVMLTHKSLVTSVAQQVDGENPNVNLNSNDVIICVLPLFHIYSLNSVLLCGLRVGAAILILQKYDMSSLLHLIQTHKATIAPFVPPIVLDFAKNPDIQRYDLSSIRIVMSGAAPMGKDLEDTVKARLPNATLGQGYGMTEAGPVLSMCLAFAKEPFKVKSGACGTVVRNAEMKIIHPDTSVSLPRNHPGYLNNKEATEKTIDKDGWLHTGDLGFIDDNDEIFIVDRLKELIKYKGYQVAPAELEALLTSNPNISAAAVIPMEDEAAGEIPVAFVVRSNGSKISENDIKKYISDQVIYYKKIRKVLFVDSIPIAPSGKILRKVLKAQLEAGAF 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24730608 24737898 - CmPI595203_11g012690.1 Cmu11g1269 429791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1269 530 Pfam AMP-binding enzyme 34 389 IPR000873 -
Cmu11g1269 530 CDD 4CL 22 521 - -
Cmu11g1269 530 SUPERFAMILY Acetyl-CoA synthetase-like 12 527 - -
Cmu11g1269 530 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Cmu11g1269 530 Gene3D - 4 425 IPR042099 -
Cmu11g1269 530 FunFam 4-coumarate--CoA ligase 2 427 528 - -
Cmu11g1269 530 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 426 - -
Cmu11g1269 530 Pfam AMP-binding enzyme C-terminal domain 440 515 IPR025110 -
Cmu11g1269 530 Gene3D - 426 528 IPR045851 -
Cmu11g1269 530 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 522 - GO:0016405(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu10g2044 Cmu-Chr10:26208718 Cmu11g1269 Cmu-Chr11:24730608 5.90E-200 dispersed
Cmu11g1269 Cmu-Chr11:24730608 Cmu11g1368 Cmu-Chr11:25831942 1.10E-102 dispersed
Cmu10g1435 Cmu-Chr10:8577303 Cmu11g1269 Cmu-Chr11:24730608 3.90E-20 transposed
Cmu11g1269 Cmu-Chr11:24730608 Cmu06g1391 Cmu-Chr6:25068067 1.60E-194 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1269 K01904 - csv:101210868 937.947