Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1277 ATGGGTTTTATTGAAGAATACTTGCCAGCAATGGCTATGTTTGGGCTTCAAGTGACTTATGCCATAATGGCTCTTATCTCCCGGGCTGCCCTTTTGAAGGGCATGAGTCCTAGAGTTTTTGTTGTTTATAGGCAAGCCATTGCCACTCTCTTTATTGCACCCATTGCTTATTTCTCCAGGTCGAAATCTAGGAGGGTGTCTTTGAACTTGAAGAGCTTTTCTCTAATCTTCCTTGCTTCTCTCGTCGGTGTGACGATGAACCAAAATGTTTACTTTGAGGGAGTTTTTTTAGTTAGCTCGTCAATGGCAACGGCAATGACTAATTTGATTCCTGCAGTGACGTTTGTTATAGCAACGATAGTCGGCATGGAGAATTTAAGGTTGGGAAGCTTGAGGAGCATCGCAAAGATTGGAGGGACAGTGGTTTGTGTGAGTGGGGCCATGTGTATGGCTCTTCTAAGGGGTCCAAAGCTTCTCAATACAACACAAGGTTTCGTGGTGAAATCTACATTATTTAGTGTGGAAAGTGGAAGTCACCGTGCTTGGTTATTGGGTTCCTTGTGTCTCTTTGGGAGTTGTTGTTGCTGGTCAATTTGGTTGATTTTGCAGGTACCAGCTTCAGCAAGCTATCCCGACAACTTATCTTTATCAGCATGGATGTGTTTCTTTGCCACAATTCAATCGATCATTGTTACTCTATTGGTAGAGCCAATCAATCTACAAACTTGGAAAATACATTCAACCATTGAACTTATTTGTTATCTCTTCTCAGGCATTGTTGGGTCAGGGGTTGCCTTCTTTGTTCAAGCTTGGTGTGTTTCAAAAAGAGGCCCCGTCTTCTCAGCAATGTTCAACCCTCTTTGCACCATTGTTACAACTATTTTGGCAGCTATGGTTCTTCACGAGGAAATTTTTACTGGAAGCTTGTTGGGGGGTGTGGCTGTAATTATTGGATTGTACATTGTTCTTTGGGGAAAAGCAAAAGATTATGTGAAGGAAGAAGGCAAAGAAAAGCAAAGTGTTGAAAAAGAAGAAGAGAATTGTGAATCAGCTGAGAGAATTAGCAATTGTCAAATTGATTTGGAGGAACCACTTTTGTCTAAAGAATCATGA 1113 41.51 MGFIEEYLPAMAMFGLQVTYAIMALISRAALLKGMSPRVFVVYRQAIATLFIAPIAYFSRSKSRRVSLNLKSFSLIFLASLVGVTMNQNVYFEGVFLVSSSMATAMTNLIPAVTFVIATIVGMENLRLGSLRSIAKIGGTVVCVSGAMCMALLRGPKLLNTTQGFVVKSTLFSVESGSHRAWLLGSLCLFGSCCCWSIWLILQVPASASYPDNLSLSAWMCFFATIQSIIVTLLVEPINLQTWKIHSTIELICYLFSGIVGSGVAFFVQAWCVSKRGPVFSAMFNPLCTIVTTILAAMVLHEEIFTGSLLGGVAVIIGLYIVLWGKAKDYVKEEGKEKQSVEKEEENCESAERISNCQIDLEEPLLSKES 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 24927259 24932240 - CmPI595203_11g012770.1 Cmu11g1277 429799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1277 370 PANTHER WAT1-RELATED PROTEIN 11 340 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu11g1277 370 Pfam EamA-like transporter family 12 142 IPR000620 GO:0016020(InterPro)
Cmu11g1277 370 Pfam EamA-like transporter family 184 323 IPR000620 GO:0016020(InterPro)
Cmu11g1277 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 219 327 - -
Cmu11g1277 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 43 152 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g1342 Cmu-Chr6:24566396 Cmu11g1277 Cmu-Chr11:24927259 6.50E-89 dispersed
Cmu11g1277 Cmu-Chr11:24927259 Cmu11g1565 Cmu-Chr11:27922639 1.20E-55 dispersed
Cmu11g1277 Cmu-Chr11:24927259 Cmu06g1341 Cmu-Chr6:24559635 1.10E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1277 - - - 0.0