Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1324 ATGGGAAAGCTTAGCTTGAACTGCTGTAATAGCTTCCTTGAGAATTCAAAACCTTATTTTGCCATGATATCCTTACAATTTGGATATGCTGGCATGAACATCATCTCTAAAGTCTCTCTTAGTAGAGGGATGAGTCATTACGTCCTCGTCGTTTATCGACATGCTTTCGCTACCGCTTCTATTGCTCCCTTCGTTCTCTTCTTCGAACGGAGAGGACAGCCAAGGATAACACTCAAAGTTTTCATTCAAATATTTGTGTTGGCTTTGCTTGGCCCGGTTATCGATCAAAATTTCTACTATGCTGGGCTAAAATATACTTCACCAACTTTCTCTTGTGCCATGAGCAACATGCTGCCTGCAATGACATTTGTGATGGCTGTGATCTTTAGGATGGAAAAATTGGAGATGAAGAAATTGAGATGCCAAGCAAAAGTTTTGGGAACTTTAGTGTCAGTGGCTGGAGCAATGTTGATGACTTTATACAAAGGTCCACTTCTTCAAATGGCTTGGTCTAAAAATTCCCATATCACCAATTCTAATGAAACTTCCAACAACAAAGATTGGTTCAAAGGCTCCATTTTCCTCATCATTGCCACTCTTGCTTGGGCTTCTCTCTTTGTTTTGCAGAATGAGGCATTGAAGACATACAAGAACCATCAACTCACTCTCACCACACTCGTGTGTTTTCTTGGGACTTTGCAAGCCATAGTTGTGACTTTAGTAGCGGAGCACAAAGCTTCTGTTTGGACAATTGGTTGGGACATGAATCTTCTTGCTGCTGCCTATGCTGGAATTGTGACATCAAGTATTTCATACTATGTACAAGGGTTGGTGATGAAAAAGAGAGGACCTGTATTTACAACTGCATTTAGTCCTTTGATTATGATACTTGTGGCCATCATGGGCTCTCTCATCCTTGCTGAAAAGATTTTTCTTGGAGGAATAATAGGATCCATCTTGATAGTGTTTGGGCTATATTCAGTACTTTGGGGAAAGCACAAAGAGAATTTGGAGATGATTAAAACTGCTGCTGTTGATGATGAAATACCAAAAGCAATTAAAGCTTCTTCTCAACCAAATATTAATATTAATAATAATAATATTGCAAATAATGTTGAAGCTAATGAGATTGTGACCATGGCACCCAATAAGCTAAGTTCCAATAATAATTCAATTTTCATTTCCATGCCTGCCCTTGAAAACCCATTAAACCCAACCAAATCCCAAGAGAATAATAATAATTGA 1245 38.71 MGKLSLNCCNSFLENSKPYFAMISLQFGYAGMNIISKVSLSRGMSHYVLVVYRHAFATASIAPFVLFFERRGQPRITLKVFIQIFVLALLGPVIDQNFYYAGLKYTSPTFSCAMSNMLPAMTFVMAVIFRMEKLEMKKLRCQAKVLGTLVSVAGAMLMTLYKGPLLQMAWSKNSHITNSNETSNNKDWFKGSIFLIIATLAWASLFVLQNEALKTYKNHQLTLTTLVCFLGTLQAIVVTLVAEHKASVWTIGWDMNLLAAAYAGIVTSSISYYVQGLVMKKRGPVFTTAFSPLIMILVAIMGSLILAEKIFLGGIIGSILIVFGLYSVLWGKHKENLEMIKTAAVDDEIPKAIKASSQPNININNNNIANNVEANEIVTMAPNKLSSNNNSIFISMPALENPLNPTKSQENNNN 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25447424 25451411 - CmPI595203_11g013240.1 Cmu11g1324 429846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1324 414 Pfam EamA-like transporter family 190 329 IPR000620 GO:0016020(InterPro)
Cmu11g1324 414 Pfam EamA-like transporter family 19 159 IPR000620 GO:0016020(InterPro)
Cmu11g1324 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 248 334 - -
Cmu11g1324 414 PANTHER WAT1-RELATED PROTEIN 20 350 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Cmu11g1324 414 SUPERFAMILY Multidrug resistance efflux transporter EmrE 52 162 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0677 Cmu-Chr6:7731567 Cmu11g1324 Cmu-Chr11:25447424 1.90E-69 dispersed
Cmu06g1512 Cmu-Chr6:26391978 Cmu11g1324 Cmu-Chr11:25447424 1.40E-62 dispersed
Cmu07g0963 Cmu-Chr7:24236864 Cmu11g1324 Cmu-Chr11:25447424 4.50E-50 dispersed
Cmu10g2202 Cmu-Chr10:28098525 Cmu11g1324 Cmu-Chr11:25447424 4.20E-37 dispersed
Cmu10g2203 Cmu-Chr10:28114747 Cmu11g1324 Cmu-Chr11:25447424 3.10E-43 dispersed
Cmu10g2381 Cmu-Chr10:30238111 Cmu11g1324 Cmu-Chr11:25447424 9.80E-09 dispersed
Cmu10g2382 Cmu-Chr10:30243126 Cmu11g1324 Cmu-Chr11:25447424 3.40E-125 dispersed
Cmu11g1324 Cmu-Chr11:25447424 Cmu11g1565 Cmu-Chr11:27922639 4.80E-93 dispersed
Cmu11g1324 Cmu-Chr11:25447424 Cmu04g0632 Cmu-Chr4:20118561 3.20E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1324 - - - 0.0