Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1349 ATGGAACTTACAGATATGCAGCAAAGCAACAAGCAGCAGCAGCAGCAGCAGCAGCAGCATCATCAACTCCACCATCAAAACCAAAACCAAAAACGTGGTTCTTCTCAATCACAATCTCAATCTCCATCACCATCTCCATCTCCATCTCCTCAGCAGCACCTTCATGGAGTTCCTTTCGATGGCAGATCACCAGTTTCGGCGGCAGCAGCAACAGGAGGAGGAGGAGGAGGAGGAGCTCCACCTTTCATGGCTTCCATCTCCTCTCTTGTCTCCCTCCCTCCTCCTTCTTCTTCCAATTCTTCTGTTTCCTCCGCCTCTAACGCCGCCGCCCCTCCTCCCCACCTCGACGCTTCACTCGTCATCGCCACCCGATCCGACACCACCACCACCACCACCGATCCTTCTCCCCGATCTGCTTCCAACAATAACGCTCTCAAGCGTTCCACCAAAGATCGCCACACTAAAGTCGATGGTCGTGGCCGTCGTATACGTATGCCGGCCACTTGTGCCGCTAGGGTTTTCCAGTTGACTCGTGAATTAGGCCATAAGTCAGACGGCGAAACCATCGAGTGGCTTCTCCAGCAAGCCGAACCTGCCATCATCGCCGCTACTGGCACCGGTACAATCCCTGCTAATTTCTCCTCCTTAAATATCTCAATTCGTAGCAGTGGATCCACTCTCTCTGCTCCTCCCTCCAAATCCGCTCCCCATTCCTTTCATGGCGCTCTGGCTCTCGCTCACCATCCCCACGCCTATGATGAAGGCTTCGCACATGCTGCTCTGTTAGGGTTTCACCAGCACCAGCAACAGCAACAACAGCAACACCAACTCAATTTAATGACCGCCGATCAAATCGGCGACACTCTCCCGACCGGCGGCGGCGGAGGAGATTCAACCGATAACTATATGAGAAAACGATTTAGAGAAGACCTGTTTAAAGAAGATACACAATCTCCAGGAGAGAGCAGTGGCGGCGCTGGATCTCCGAAAGCAATGAAGAGCGATCTGCAATTAGAGAAACAACAACCACCATCAGCTTCTTCGTCGGGGCTACTGCGGCCTGGGGCGGCGATGTGGGCGGTGGCGGCTCCAGGTCCGAGCAGTGGAGCGAGTAACACGTTTTGGATGTTGCCGGTGACGACAGGTTCAGGCGGAGGAAATGTAGGGAGTTCTGGCGGCGGCGGCGGCGGCGGCGTTGGGGGAATGGAAGCTCATCAGATGTGGCCATTTTCGACAAGCGGAAACACATTACAGGCGCCGTTGCATTTGATGCCAAGATTCAACATCCCGGAAATTCAAGCGGCGGCGGCAGCAGCAGGAGGACGAGGCGGCGGGCAATTGCAACTGGGTTCGATGTTGATGCAACAAGGTGGCGGAGGAGGCGGTGGTTTGGGAGTAACGGAATCGAATTTGGGAATGTTGGCTGCTCTTAATGCTGCTTACTCTAGAGGCGGTGGTTTCAATATTAATTCTGATCATAATCATCCATTGGAGAATCATCCTCACACTCATACTACTGATAGTGGAGATGAAGCTCCAAACACTTCACAATGA 1554 53.47 MELTDMQQSNKQQQQQQQQHHQLHHQNQNQKRGSSQSQSQSPSPSPSPSPQQHLHGVPFDGRSPVSAAAATGGGGGGGAPPFMASISSLVSLPPPSSSNSSVSSASNAAAPPPHLDASLVIATRSDTTTTTTDPSPRSASNNNALKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSSLNISIRSSGSTLSAPPSKSAPHSFHGALALAHHPHAYDEGFAHAALLGFHQHQQQQQQQHQLNLMTADQIGDTLPTGGGGGDSTDNYMRKRFREDLFKEDTQSPGESSGGAGSPKAMKSDLQLEKQQPPSASSSGLLRPGAAMWAVAAPGPSSGASNTFWMLPVTTGSGGGNVGSSGGGGGGGVGGMEAHQMWPFSTSGNTLQAPLHLMPRFNIPEIQAAAAAAGGRGGGQLQLGSMLMQQGGGGGGGLGVTESNLGMLAALNAAYSRGGGFNINSDHNHPLENHPHTHTTDSGDEAPNTSQ 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25694987 25696540 - CmPI595203_11g013490.1 Cmu11g1349 429871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1349 517 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 100 482 IPR005333 GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Cmu11g1349 517 MobiDBLite consensus disorder prediction 1 42 - -
Cmu11g1349 517 MobiDBLite consensus disorder prediction 126 161 - -
Cmu11g1349 517 MobiDBLite consensus disorder prediction 126 145 - -
Cmu11g1349 517 MobiDBLite consensus disorder prediction 489 517 - -
Cmu11g1349 517 MobiDBLite consensus disorder prediction 1 113 - -
Cmu11g1349 517 MobiDBLite consensus disorder prediction 146 161 - -
Cmu11g1349 517 Pfam TCP family transcription factor 148 276 IPR017887 -
Cmu11g1349 517 MobiDBLite consensus disorder prediction 89 108 - -
Cmu11g1349 517 MobiDBLite consensus disorder prediction 311 351 - -
Cmu11g1349 517 ProSiteProfiles TCP domain profile. 149 203 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1349 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu02g1408 Cmu-Chr2:27798216 Cmu11g1349 Cmu-Chr11:25694987 3.90E-29 dispersed
Cmu04g1279 Cmu-Chr4:27166591 Cmu11g1349 Cmu-Chr11:25694987 4.50E-34 dispersed
Cmu06g0192 Cmu-Chr6:2028488 Cmu11g1349 Cmu-Chr11:25694987 3.10E-27 dispersed
Cmu06g1677 Cmu-Chr6:27850054 Cmu11g1349 Cmu-Chr11:25694987 2.10E-37 dispersed
Cmu11g1349 Cmu-Chr11:25694987 Cmu05g2494 Cmu-Chr5:33792540 9.30E-38 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmu01g0791 . 48 264 TCP Transcription Factor Family AT5G23280 63.4 4.2e-68 255.0
Cmu02g1408 . 37 257 TCP Transcription Factor Family AT5G23280 60.3 1.9e-60 229.6
Cmu06g0017 . 59 341 TCP Transcription Factor Family AT2G45680 54.1 1.5e-66 250.4
Cmu05g2494 . 64 158 TCP Transcription Factor Family AT3G47620 89.7 8.6e-41 165.2
Cmu04g1279 . 40 140 TCP Transcription Factor Family AT3G47620 82.2 1.6e-39 161.0
Cmu11g1349 . 148 230 TCP Transcription Factor Family AT3G47620 90.4 1.3e-36 151.4
Cmu11g1349 . 148 240 TCP Transcription Factor Family AT1G69690 82.8 1.5e-36 150.6
Cmu05g1438 . 49 312 TCP Transcription Factor Family AT3G27010 57.0 3.1e-60 229.2
Cmu02g1408 . 9 255 TCP Transcription Factor Family AT5G08330 56.7 4.6e-64 241.5
Cmu01g0791 . 44 263 TCP Transcription Factor Family AT5G08330 62.2 8.7e-63 237.3
Cmu11g1349 . 147 384 TCP Transcription Factor Family AT1G35560 50.4 1.4e-42 170.6
Cmu07g1621 . 43 168 TCP Transcription Factor Family AT3G02150 62.1 1.3e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010392 1 0 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7167 PF03634 TCP 6.50E-39 No_clan Cmu TF