Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu11g1374 ATGGCTTCCGCTTGTGCTTCTTCCGCCATTGCGGCTGTGGCAATCTCTTCATCCAGTTCCCAGAAGAATGGGTGCCCCAAGGCTTCTAATTTCCTTACCGGCAAGAAGCTGAGGCTGAGAAACTTAACTTCCGCGGCTGCTGTTGCTCCTCGATCAGCTCCGGTATGCGCCGCAGCTGACCCCGACAGACCTCTCTGGTTCCCTGGCAGCACCCCTCCTCCATGGCTCGACGGCAGCCTTCCCGGCGACTTTGGCTTTGACCCACTTGGTCTTGCGTCTGATCCGGAGAGTCTGAGATGGAACCAGCAGGCGGAGCTGGTACACTGCCGATGGGCAATGTTGGGGGCGGCCGGAATTTTCATCCCGGAATTTTTGACAAAGATCGGAATATTGAACACTCCGTCATGGTACACCGCCGGTGAATTGGAATACTTCACCGACACCACCACTCTGTTCATAGTGGAACTCATTTTCATTGGTTGGGCCGAAGGTAGACGGTGGGCCGACATCCTCAAACCCGGCTGCGTCAACACCGACCCGATTTTCCCTAACAACAAGCTCACCGGAACCGACGTCGGATACCCGGGTGGGCTTTGGTTCGACCCGCTCGGGTGGGGAAGCGGATCACCCGAAAAGATCAAGGAATTGAGAACGAAAGAGATAAAGAACGGGCGATTGGCTATGTTGGCGGTGATGGGAGCTTGGTTCCAACACATTTACACCGGCACCGGTCCCATTGACAACCTCTTCGCTCACCTTGCCGATCCCGGCCACGCCACCGTCTTCGCCGCTTTCACACCAAAGTGA 807 56.26 MASACASSAIAAVAISSSSSQKNGCPKASNFLTGKKLRLRNLTSAAAVAPRSAPVCAAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 25880952 25883253 - CmPI595203_11g013740.1 Cmu11g1374 429896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu11g1374 268 FunFam Chlorophyll a-b binding protein, chloroplastic 73 258 - -
Cmu11g1374 268 SUPERFAMILY Chlorophyll a-b binding protein 59 266 - -
Cmu11g1374 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 12 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
Cmu11g1374 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Cmu11g1374 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu03g2095 Cmu-Chr3:29397058 Cmu11g1374 Cmu-Chr11:25880952 1.70E-88 dispersed
Cmu04g1255 Cmu-Chr4:27003296 Cmu11g1374 Cmu-Chr11:25880952 1.00E-61 dispersed
Cmu08g1529 Cmu-Chr8:27128653 Cmu11g1374 Cmu-Chr11:25880952 7.20E-50 dispersed
Cmu09g1969 Cmu-Chr9:35759877 Cmu11g1374 Cmu-Chr11:25880952 6.40E-37 dispersed
Cmu10g2907 Cmu-Chr10:35434154 Cmu11g1374 Cmu-Chr11:25880952 1.00E-27 dispersed
Cmu11g1374 Cmu-Chr11:25880952 Cmu11g1896 Cmu-Chr11:30955298 3.40E-23 dispersed
Cmu11g1374 Cmu-Chr11:25880952 Cmu06g1664 Cmu-Chr6:27755842 1.30E-62 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu11g1374 K08908 - csv:101214055 518.079