Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmu11g1388 | ATGGTTGAAAACAAGCAGTTTCCGAATCGTTTCCCCTACACTTCAGCGTTCGTCGTCCTTGATATACGCTCGCAATCGTTTCTGCATCCTCCTTTAAACGATATGATTTGTAGCAATAGTTGTAGGATCAGTTTTGTTACTAAGACAATGCAGATAGAGGATGTGATTGTTAGCCGAGGCTCTGATTTCTGGATCTTGAGCATGAAGCTGGACACTAGCGGTCTTGAATCGGCCGCTTTTCTCTCTGGCGCGGGCAGTGCTGATCTGCTCAATGGGTTATCCTCGGCGCCATCTTTTGATATTCCAAATGCTACTAATTTTGATGGATTTCAGAAAGAGGCTATTCAGATGGTGAAGCCAGCAAAGGGGACGACAACTCTGGCCTTCATTTTCAAGGAAGGAGTCATGGTTGCTGCTGATTCCCGAGCGAGCATGGGAAGGTACATATCATCCCAATCTGTGAAGAAGATCGTTGAAATAAATCCATACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTACCAGTTTTGGCACAGAAATCTTGGAATTAAGTGTCGACCACATGAGTTGGCAAACAAGCGTAGAATTTCAGTGACGGGTGCATCCAAGTTGCTGGCTAACATTCTCTATTCGTACCGGGGAATGGGTCTTTCAGTTGGTACCATGATTGCTGGATGGGATGAAACTGGTCCTGGATTGTATTATGTTGACAGTGAAGGAGGAAGATTGAAAGGAATTCGATTTTCAGTTGGATCTGGTTCACCTTATGCATATGGTGTCCTGGACAATGGTTATCGGTACGATTTATCAGTTGAAGAAGCCGCTGAATTGGGTCGAAGAGCAATTTATCATGCAACATTCCGAGACGGGGCCAGCGGTGGCGTTGCAAGTGTAGAGCTTTTTAACGATTGGATCCCAGGTTGCGGGAGGACAGATCACAGCCATCAAAATCTCCTTTCATCCAAAGTTGCGTTTAGGGTTTTAGCCCTCTCGCCGGATGGTCTCTCGCTTCTCTCTCTGAAGTCGGCGATTGACCAGTCGCCGGATTCCTCTGTTTTCTCCGATTGGAACGAGGATGACTCCACGCCTTGCCGATGGTCTGGCATTTCTTGCATGAACGTTTCCGGTGACTCGCGAGTCGTTGGAATTGCTCTCTCTGGTAAGAATCTCCATGGCTACATTCCTTCTGAACTCGGCTCGCTTGTCTATCTCCGGCGATTGAACCTCCATAACAATAATCTCTACGGCTCGATACCTGAACAGTTGTTTAATGCTACCTCATTACATAGCCTATTTCTCTACAGTAATAATCTCTCCGGTCCTTTTCCCCCTTCGATCTGCAACATTCCGAGGCTTCAAAACCTCGATCTCTCCAACAATTCTCTCGCCGGACCACTACCCGACGAATTGAAGAATTGTAAACAATTGCAGCGATTAATACTCGCTAGAAATCAATTCGACGGAGAAATACCGTCTGGTGTTTGGTCTGGGATGGATAATTTACTTCAACTCGATCTCTCATCCAACGATTTCAGCGGATCGATTCCGGAGGATCTAGGGCAACTGAAGACACTTTCCGGTACGCTCAACCTCTCCTTCAATCATTTATCAGGTAAAATCCCGAAAACTCTCGGAGATTTGCCGGTAACGGTGAGTTTCGACCTCCGGAGCAACAATTTAAGCGGAAGCATACCTCAGACAGGTTCTTTCGCAAATCAAGGACCGACTGCATTTCTCAACAATCCCGAGTTATGTGGATTTCCTCTTCAAAAATCTTGTGAGAGTTCAGAACGTGGCTCACCGGGAAATCCGGATTCCAAGCCATCTTACATTTCCCCTAGAAAAGGATTGAGCGCCGGATTAATCATTCTCATCTCTGCCGCTGACGCCGCCGGAGTAGCATTTATCGGCTTGGTAATAGTATACATATATTGGCGACGGAAGGACAATTCGAACGGCTGTAGCTGTACGGCGAAAAGAAAATTCGGTGGGAATCAGAAAGACAATCTCTGCAATTTTCCTTGTATGAATGGACATGATAAGAATGAGGAGTCGGAAATGGAGGAACCGGAGAACAGTGAGAGAAGCAGAGAGGAAGGAGGGCTGGTGGCCGTAGACAAAGGCTTTACGTTCGAACTCGACGAGTTGCTGAGAGCGTCGGCGTATGTGCTGGGAAAGAGTGGACTGGGAATTGTGTACAAAGTGGTCCTCGGAAATGGGATTCCGGTGGCTGTACGGCGGTTGGGGGAAGGCGGAGAACAGAGGTATAAGGAGTTTGCGGCGGAGGTGCAGGCGATTGGAAGGGTAAAGCATCCTAATATTGTGAAACTGAGAGCTTATTATTGGGCGCCGGATGAGAAGCTTCTGATCAGTGATTTTATCTCCAATGGGAACTTGGCCTCTGCTCTTCGCGGGAAGAACGGGCAGGCATCTTCAATCCTTTCATGGGCAACAAGATTACGAGTAGCCAAGGGAACCGCCAGAGGATTAGCCTATCTACACGAATGCAGCCCAAGAAAATTCGTCCATGGCGACATCAAGCCCTCCAACATTCTCCTCGACAACGATTTCCATCCCCACATCTCCGACTTCGGCCTCAACCGCTTGATCAGCATCACCGGCAACAACCCCTCCTCCTCAGGCGGCCTCATCGGTGGCGCCTTCTCCTACCTCAAGTCCGTCCAAACCGACCGCACCAACAACTACTGCGCCCCGGAGGCCCGAGCCCCCGGCGGCCGGCCCACCCAAAAATGGGACGTCTATTCCTTCGGCGTCATGGTCCTCGAATTACTCACCGGAAAGTCGCCGGAGCTTTCCCCGAACACGTCGACTTCTTTGGAGATTCCGGATTTGGTGAGATGGGTTAGAAAAGGGTTTGAAGAAGCAAAGCCATTGTCGGAATTGGTGGACCCTGCTCTGTTACAAGAAGTACATGCTAAGAAAGAAGTGCTGGCCGTATTCCACTTGGCGCTCGCTTGTACAGAGAGCGACCCGGAAATTCGGCCCAGAATGAAGACGGTGTCGGAGAATTTCGAGAGGATTGGATCGTGA | 3054 | 48.85 | MVENKQFPNRFPYTSAFVVLDIRSQSFLHPPLNDMICSNSCRISFVTKTMQIEDVIVSRGSDFWILSMKLDTSGLESAAFLSGAGSADLLNGLSSAPSFDIPNATNFDGFQKEAIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGRYISSQSVKKIVEINPYMLGTMAGGAADYQFWHRNLGIKCRPHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGIRFSVGSGSPYAYGVLDNGYRYDLSVEEAAELGRRAIYHATFRDGASGGVASVELFNDWIPGCGRTDHSHQNLLSSKVAFRVLALSPDGLSLLSLKSAIDQSPDSSVFSDWNEDDSTPCRWSGISCMNVSGDSRVVGIALSGKNLHGYIPSELGSLVYLRRLNLHNNNLYGSIPEQLFNATSLHSLFLYSNNLSGPFPPSICNIPRLQNLDLSNNSLAGPLPDELKNCKQLQRLILARNQFDGEIPSGVWSGMDNLLQLDLSSNDFSGSIPEDLGQLKTLSGTLNLSFNHLSGKIPKTLGDLPVTVSFDLRSNNLSGSIPQTGSFANQGPTAFLNNPELCGFPLQKSCESSERGSPGNPDSKPSYISPRKGLSAGLIILISAADAAGVAFIGLVIVYIYWRRKDNSNGCSCTAKRKFGGNQKDNLCNFPCMNGHDKNEESEMEEPENSERSREEGGLVAVDKGFTFELDELLRASAYVLGKSGLGIVYKVVLGNGIPVAVRRLGEGGEQRYKEFAAEVQAIGRVKHPNIVKLRAYYWAPDEKLLISDFISNGNLASALRGKNGQASSILSWATRLRVAKGTARGLAYLHECSPRKFVHGDIKPSNILLDNDFHPHISDFGLNRLISITGNNPSSSGGLIGGAFSYLKSVQTDRTNNYCAPEARAPGGRPTQKWDVYSFGVMVLELLTGKSPELSPNTSTSLEIPDLVRWVRKGFEEAKPLSELVDPALLQEVHAKKEVLAVFHLALACTESDPEIRPRMKTVSENFERIGS | 1017 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 26049690 | 26063554 | - | CmPI595203_11g013880.1 | Cmu11g1388 | 429910 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmu11g1388 | 1017 | SUPERFAMILY | N-terminal nucleophile aminohydrolases (Ntn hydrolases) | 117 | 303 | IPR029055 | - | |
| Cmu11g1388 | 1017 | FunFam | Os07g0541700 protein | 800 | 882 | - | - | |
| Cmu11g1388 | 1017 | FunFam | Leucine-rich repeat receptor-like protein kinase | 702 | 794 | - | - | |
| Cmu11g1388 | 1017 | Pfam | Leucine rich repeat N-terminal domain | 332 | 372 | IPR013210 | - | |
| Cmu11g1388 | 1017 | SMART | serkin_6 | 723 | 1015 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cmu11g1388 | 1017 | Gene3D | Ribonuclease Inhibitor | 495 | 596 | IPR032675 | - | |
| Cmu11g1388 | 1017 | ProSiteProfiles | Protein kinase domain profile. | 719 | 1015 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cmu11g1388 | 1017 | CDD | STKc_IRAK | 725 | 1015 | - | - | |
| Cmu11g1388 | 1017 | MobiDBLite | consensus disorder prediction | 593 | 612 | - | - | |
| Cmu11g1388 | 1017 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 | 474 | 1015 | IPR046959 | - | |
| Cmu11g1388 | 1017 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 331 | 497 | - | - | |
| Cmu11g1388 | 1017 | SUPERFAMILY | Protein kinase-like (PK-like) | 724 | 1010 | IPR011009 | - | |
| Cmu11g1388 | 1017 | MobiDBLite | consensus disorder prediction | 594 | 608 | - | - | |
| Cmu11g1388 | 1017 | SUPERFAMILY | L domain-like | 336 | 591 | - | - | |
| Cmu11g1388 | 1017 | CDD | proteasome_beta_type_5 | 124 | 299 | - | - | |
| Cmu11g1388 | 1017 | Pfam | Leucine Rich Repeat | 529 | 548 | IPR001611 | GO:0005515(InterPro) | |
| Cmu11g1388 | 1017 | Pfam | Leucine Rich Repeat | 428 | 449 | IPR001611 | GO:0005515(InterPro) | |
| Cmu11g1388 | 1017 | Pfam | Leucine Rich Repeat | 405 | 425 | IPR001611 | GO:0005515(InterPro) | |
| Cmu11g1388 | 1017 | Pfam | Leucine Rich Repeat | 452 | 474 | IPR001611 | GO:0005515(InterPro) | |
| Cmu11g1388 | 1017 | Pfam | Leucine Rich Repeat | 501 | 523 | IPR001611 | GO:0005515(InterPro) | |
| Cmu11g1388 | 1017 | PRINTS | Proteasome component signature | 263 | 274 | IPR000243 | GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro) | |
| Cmu11g1388 | 1017 | PRINTS | Proteasome component signature | 131 | 146 | IPR000243 | GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro) | |
| Cmu11g1388 | 1017 | PRINTS | Proteasome component signature | 252 | 263 | IPR000243 | GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro) | |
| Cmu11g1388 | 1017 | PRINTS | Proteasome component signature | 288 | 299 | IPR000243 | GO:0004298(InterPro)|GO:0005839(InterPro)|GO:0051603(InterPro) | |
| Cmu11g1388 | 1017 | FunFam | Leucine-rich repeat receptor-like protein kinase | 501 | 596 | - | - | |
| Cmu11g1388 | 1017 | Gene3D | Ribonuclease Inhibitor | 333 | 494 | IPR032675 | - | |
| Cmu11g1388 | 1017 | Pfam | Proteasome subunit | 122 | 299 | IPR001353 | GO:0005839(InterPro)|GO:0051603(InterPro) | |
| Cmu11g1388 | 1017 | Gene3D | Transferase(Phosphotransferase) domain 1 | 795 | 1017 | - | - | |
| Cmu11g1388 | 1017 | Pfam | Protein kinase domain | 724 | 951 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Cmu11g1388 | 1017 | Gene3D | Phosphorylase Kinase; domain 1 | 711 | 794 | - | - | |
| Cmu11g1388 | 1017 | Gene3D | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | 124 | 305 | IPR029055 | - | |
| Cmu11g1388 | 1017 | ProSitePatterns | Proteasome beta-type subunits signature. | 127 | 174 | IPR016050 | GO:0005839(InterPro)|GO:0051603(InterPro) | |
| Cmu11g1388 | 1017 | ProSiteProfiles | Proteasome beta-type subunit profile. | 123 | 302 | IPR023333 | - | |
| Cmu11g1388 | 1017 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 842 | 854 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmu04g0129 | Cmu-Chr4:2153647 | Cmu11g1388 | Cmu-Chr11:26049690 | 6.70E-94 | dispersed | |
| Cmu05g1133 | Cmu-Chr5:10779808 | Cmu11g1388 | Cmu-Chr11:26049690 | 3.80E-59 | dispersed | |
| Cmu08g0958 | Cmu-Chr8:21879463 | Cmu11g1388 | Cmu-Chr11:26049690 | 3.60E-109 | dispersed | |
| Cmu11g0257 | Cmu-Chr11:3111452 | Cmu11g1388 | Cmu-Chr11:26049690 | 2.50E-48 | dispersed | |
| Cmu11g0943 | Cmu-Chr11:12979643 | Cmu11g1388 | Cmu-Chr11:26049690 | 1.10E-89 | dispersed | |
| Cmu11g1388 | Cmu-Chr11:26049690 | Cmu01g0201 | Cmu-Chr1:1971034 | 2.30E-48 | dispersed | |
| Cmu11g1388 | Cmu-Chr11:26049690 | Cmu05g2303 | Cmu-Chr5:32342006 | 6.60E-112 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 75943 | PF00069 | Pkinase | 1.40E-32 | CL0016 | Cmu | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmu11g1388 | - | - | - | 0.0 |